BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950456
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57655.2 | Symbols: | xylose isomerase family protein | chr... 2420 0.0
> AT5G57655.2 | Symbols: | xylose isomerase family protein | chr5:23346760-23350039
FORWARD LENGTH=1938
Length=1938
Score = 2420 bits (1310), Expect = 0.0
Identities = 1421/1476 (96%), Gaps = 2/1476 (0%)
Strand=Plus/Plus
Query 1 GTTC-AGAGTTCGTTGAAAACAATGAAGAAAGTTGAtttttttATGCTCCTGCTCTGCTT 59
|||| || ||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 250 GTTCAAG-GTTCGTTGAAAACTATGAAGAAAGTTGAGTTTTTTATGCTCCTTCTCTGCTT 308
Query 60 AATCGCAGCGTCATTTCTAGTGTCTGCTGATCCACCAACGTGTCCTGCTGATTTGGGAGG 119
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 309 CATCGCAGCGTCATCTCTAGTGTCTGCTGATCCACCAACATGTCCTGCTGATTTGGGAGG 368
Query 120 GAAGTGTAGTGATTCTGATGATTGGCAAGGTGATTTCTTCCCTGAAATCCCCAAGATTAA 179
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 369 CAAGTGTAGTGATTCTGATGACTGGCAAGGTGATTTCTTCCCTGAAATCCCCAAGATTAA 428
Query 180 GTATGAGGGACCTTCGAGTAAGAACCCACTTGCTTACAGGTGGTATAACGCAGAAGAGGA 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 429 GTATGAGGGACCTTCGAGTAAGAACCCACTTGCTTACAGGTGGTATAACGCTGAAGAAGA 488
Query 240 GATTCTTGGGAAGAAAATGAAGGATTGGTTTAGATTCAGTGTTGCGTTTTGGCATACTTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GATTCTTGGGAAGAAAATGAAGGATTGGTTTAGATTCAGTGTTGCGTTTTGGCATACTTT 548
Query 300 CCGTGGGACTGGAGGTGATCCATTTGGTGCTGCTACAAAGTATTGGCCTTGGGAAGATGG 359
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 549 CCGTGGGACTGGAGGTGATCCATTTGGTGCTGCTACTAAGTATTGGCCTTGGGAAGATGG 608
Query 360 TACTAACTCTGTGTCTATGGCTAAGAGAAGAATGAGAGCTAACTTTGAGTTCTTGAAGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TACTAACTCTGTGTCTATGGCTAAGAGAAGAATGAGAGCTAACTTTGAGTTCTTGAAGAA 668
Query 420 ACTTGGAGTTGATTGGTGGTGTTTCCATGACAGAGACATAGCACCTGATGGTACTACACT 479
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 669 ACTTGGAGTTGATTGGTGGTGTTTTCATGACAGAGACATAGCACCTGATGGCACTACACT 728
Query 480 TGAGGAATCTAACAAAAACTTGGATGAAGTTATCGAACTGGCCAAAGAACTGCAAAAGGG 539
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 729 TGAGGAATCTAACAAAAACTTGGATGAAGTTATCGAACTCGCCAAAGAACTCCAAAAGGG 788
Query 540 AAGCAAGATCAGACCATTGTGGGGAACAGCTCAGCTTTTCTTGCATCCTCGTTACATGCA 599
||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 789 GAGCAAAATCAAACCATTGTGGGGAACAGCTCAGCTTTTCTTGCATCCTCGTTATATGCA 848
Query 600 CGGAGGAGCAACCAGCTCTGAGGTTGGAGTGTATGCTTACGCTGCTGCGCAGGTAAAGAA 659
||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 849 CGGAGGAGCGACCAGCTCTGAAGTTGGAGTGTATGCTTACGCTGCTGCTCAGGTGAAGAA 908
Query 660 AGCCATGGAGGTTACACATTACTTAGGCGGTGAAAACTACGTTTTCTGGGGTGGTCGTGA 719
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 909 AGCCATGGAGGTAACACATTACTTAGGTGGTGAAAACTACGTTTTTTGGGGTGGTCGTGA 968
Query 720 AGGTTATCAGACGCTTTTGAACACTGATATGGGAAGAGAGCTTGATCATCTGGCCAGGTT 779
|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 969 AGGTTATCAGACACTCTTGAACACTGATATGGGAAGAGAGCTTGATCATCTAGCCAGGTT 1028
Query 780 CTTTGAAGCTGCTGTTGCTTACAAGAAGAAGATTGGATTCAAAGGCACACTTTTAATCGA 839
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1029 CTTTGAAGCTGCTGTTGCTTACAAGAAGAAGATTGGATTCAAAGGCACGCTTTTAATCGA 1088
Query 840 GCCCAAGCCTCAAGAACCCACCAAGCACCAGTATGACTGGGATGCTGCAACAGCTGCCAA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 GCCCAAGCCTCAAGAACCCACCAAGCACCAGTATGACTGGGATGCTGCAACAGCTGCCAA 1148
Query 900 TTTCTTGAGGAAATATGGTCTTATTGATGAGTTTAAGCTCAACATTGAGTGTAACCACGC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1149 TTTCTTGAGGAAATATGGTCTTATTGATGAGTTTAAGCTCAACATTGAGTGTAACCATGC 1208
Query 960 CACGCTTTCTGGTCACACGTGTCATCACGAGCTTGAAACTGCAAGACTTAATGGTTTACT 1019
|||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1209 CACGCTCTCTGGTCACACTTGTCATCACGAGCTTGAAACTGCAAGAATTAATGGTTTACT 1268
Query 1020 TGGCAACATCGATGCAAACACTGGCGATGCTCAAACTGGATGGGATACCGATCAGTTTCT 1079
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1269 TGGCAACATTGATGCAAACACTGGCGATGCTCAAACTGGATGGGATACAGATCAGTTTCT 1328
Query 1080 TACAGATGTTGGAGAAGCAACCATGGTTATGATGAGTGTCATCAAAAATGGTGGGATTGC 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 TACAGATGTTGGAGAAGCAACCATGGTTATGATGAGTGTCATCAAAAATGGTGGGATTGC 1388
Query 1140 TCCAGGAGGCTTCAACTTCGACGCCAAACTGCGAAGAGAGAGTACAGATGTTGAAGACTT 1199
|||||| ||||||||||| ||||| ||||||||||||||||||||||| || ||||||||
Sbjct 1389 TCCAGGCGGCTTCAACTTTGACGCTAAACTGCGAAGAGAGAGTACAGACGTGGAAGACTT 1448
Query 1200 GTTCATTGCTCATATTAGTGGAATGGATACAATGGCTCGTGGACTGAGAAATGCAGTCAA 1259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 ATTCATTGCTCATATTAGTGGAATGGATACAATGGCTCGTGGACTGAGAAATGCAGTCAA 1508
Query 1260 AATCTTGGAGGAGGGAAGTCTAAACGAATTGGTACGCAAGCGATATGCAACTTGGGACTC 1319
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1509 AATCTTGGAGGAGGGAAGTCTAAGTGAATTGGTACGCAAGCGATATGCAACTTGGGACTC 1568
Query 1320 TGAGCTTGGGAAGCAAATAGAAGAAGGAAAAGCCGATTTCGAGTATCTTGAGAAGAAGGC 1379
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 1569 TGAGCTTGGGAAGCAAATAGAAGAAGGAAAAGCTGATTTTGAGTATCTTGAGAAGAAAGC 1628
Query 1380 TAAAGAGTTTGGAGAACCAAAGGTTTCTTCTGCCAAACAGGAGCTCGCTGAGATGATCTT 1439
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1629 TAAAGAGTTTGGAGAACCAAAGGTTTCTTCTGCTAAACAGGAACTCGCTGAGATGATTTT 1688
Query 1440 CCAATCAGCAATGTAAGAAGAATAAGAAGAAGGCTT 1475
|||||| ||||||||||||||| || ||||||||||
Sbjct 1689 CCAATCTGCAATGTAAGAAGAAGAACAAGAAGGCTT 1724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72740589705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5