BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950476 Length=277 Score E Sequences producing significant alignments: (Bits) Value AT5G57815.1 | Symbols: | Cytochrome c oxidase, subunit Vib fam... 431 2e-120 AT4G28060.1 | Symbols: | Cytochrome c oxidase, subunit Vib fam... 307 3e-83 > AT5G57815.1 | Symbols: | Cytochrome c oxidase, subunit Vib family protein | chr5:23426668-23427856 FORWARD LENGTH=541 Length=541 Score = 431 bits (233), Expect = 2e-120 Identities = 254/264 (96%), Gaps = 1/264 (0%) Strand=Plus/Plus Query 1 ATTCATTGATCAGATCAGCCATGGAAGACGAGATTGAACTGAAAACTGCTCCTGCTGATT 60 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 66 ATTCATTGATCAGATCAGCCATGGAAGACGAGATTGAATTGAAAACTGCTCCTGCTGATT 125 Query 61 TCCGGTTCCCTACAACAAATCAAACCAGGCACTGCTTCACTCGGTACATCGAGTTCCACA 120 ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 126 TCCGGTTTCCTACAACAAATCAAACTAGGCACTGCTTCACTCGGTACATCGAGTTTCACA 185 Query 121 GGTGTACAACTGCAAAGGGCGAGGAGTCTAATGACTGCGAAAGGTTTGCCAAGTATTACC 180 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 186 GGTGTACAACTGCAAAGGGAGAGGAGTCTAATGACTGTGAAAGGTTTGCCAAGTATTACC 245 Query 181 GCGCTCTCTGTCCTGGAGAATGGGTTGAGAAGTGGAACGAGCAGAGGGAGAGTGGAACTT 240 | || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 246 GTGCCCTCTGTCCTGGAGAATGGGTTGACAAGTGGAACGAGCAGAGGGAGAGTGGAACTT 305 Query 241 TTCCAGGTCCTCTTTGAACCTAAG 264 |||||||||||||||||||| ||| Sbjct 306 TTCCAGGTCCTCTTTGAACC-AAG 328 > AT4G28060.1 | Symbols: | Cytochrome c oxidase, subunit Vib family protein | chr4:13943872-13945773 REVERSE LENGTH=554 Length=554 Score = 307 bits (166), Expect = 3e-83 Identities = 228/258 (88%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 1 ATTCATTGATCAGATCAGCCATGGAAGACGAGATTGAACTGAAAACTGCTCCTGCTGATT 60 ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 154 ATTCATT--TCAGATCAGCCATGGAGGACGAGATTGAACTGAAAACTGCTCCTGCTGATT 211 Query 61 TCCGGTTCCCTACAACAAATCAAACCAGGCACTGCTTCACTCGGTACATCGAGTTCCACA 120 | ||||| || |||||||| ||||| |||||||||||||| || ||||| |||||||||| Sbjct 212 TTCGGTTTCCAACAACAAACCAAACGAGGCACTGCTTCACCCGTTACATTGAGTTCCACA 271 Query 121 GGTGTACAACTGCAAAGGGCGAGGA-GTCTAATGACTGCGAAAGGTTTGCCAAGTATTAC 179 |||| ||||||||||| || ||||| | | ||||| ||||| ||||| |||||||| ||| Sbjct 272 GGTGCACAACTGCAAAAGGTGAGGATG-CAAATGAATGCGAGAGGTTCGCCAAGTACTAC 330 Query 180 CGCGCTCTCTGTCCTGGAGAATGGGTTGAGAAGTGGAACGAGCAGAGGGAGAGTGGAACT 239 ||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| |||||| Sbjct 331 CGCGCTCTCTGCCCTGGGGAATGGGTTGACAAGTGGAATGAGCAGAGGGAGACTGGAACA 390 Query 240 TTTCCAGGTCCTCTTTGA 257 || || || ||||||||| Sbjct 391 TTCCCTGGCCCTCTTTGA 408 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12717740497 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5