BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950480
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57840.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2006 0.0
> AT5G57840.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:23432804-23435232 REVERSE LENGTH=1544
Length=1544
Score = 2006 bits (1086), Expect = 0.0
Identities = 1280/1374 (93%), Gaps = 12/1374 (1%)
Strand=Plus/Plus
Query 2 TTTAGTGATTGT-GAGTCAAATGAAGATTCAGGTGAAACAAGCTACGATCGTGAAGCCAG 60
||||||||| || || |||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 53 TTTAGTGATCGTGGA-TCAAATGAAGATTCGGGTGAAGCAAGCTACGATCGTGAAGCCAG 111
Query 61 CTGAGGAAACACCTACACACAATCTATGGCTTTCTAATTTAGACCTGATACAAGTGAGAT 120
|||| |||||||| |||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct 112 CTGAAGAAACACCCACACACAATCTATGGCTTTCCAATTTAGACTTGATTCAAGTGAGAC 171
Query 121 TTCACATGGGGACACTCTATTTCTACAACCCTTGTTCCTCCTCCGATCGTCCAAACACTC 180
|||||||||| || ||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 172 TTCACATGGGCACTCTCTACTTCTACAAACCTTGTTCCTCCTCCGATCGTCCCAACACTC 231
Query 181 AATCTCTTATCGATGCTCTGAGCAAGGTTCTTGTCCTCTTCTATCCTGCCGCTGGGAGAC 240
|||| || ||||| ||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 232 AATCCCTCATCGAAGCTCTGAGCAAGGTTCTTGTCTTCTTTTATCCTGCCGCTGGGAGAC 291
Query 241 TCCAAAAAG-ATACGAATGGGAGGTTAGAGGTTCAATGTAATGGAGAAGGAGTTTTGTTT 299
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TCC-AAAAGAATACGAATGGGAGGTTAGAGGTTCAATGTAATGGAGAAGGAGTTTTGTTT 350
Query 300 GTAGAGGCTGAGACTGATTCTACTGTACAAGACATTGGCTTACTCACTCAAAGTTTGGAT 359
||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 351 GTAGAGGCTGAAAGTGATTCTACTGTTCAAGACATTGGCTTACTCACTCAAAGTTTGGAT 410
Query 360 CTTTCTCAACTTGTACCTACCGTTGACTACGCGGGAGATATCTCCTCCTATCCTCTTCTT 419
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 411 CTTTCTCAACTTGTACCTACCGTTGACTATGCAGGAGATATCTCCTCCTATCCTCTTCTT 470
Query 420 CTCTTTCAGGTTACATATTTCAAATGTGGAACGACCTGTGTTGGAAGTTCAATACACCAT 479
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 471 CTCTTTCAGGTTACTTATTTCAAATGTGGAACGATCTGTGTTGGAAGTTCAATACACCAT 530
Query 480 ACATTCGGAGAAGCTACTTCTCTTGGGTATATCATGGAAGCATGGTCTCAAACTGCTAAG 539
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 531 ACATTCGGAGAAGCTACTTCTCTTGGGTATATCATGGAAGCATGGTCTCTAACTGCTAGG 590
Query 540 GGACTTCCAGTTAAGCTAACACCGTTCTTAGACCGCACTGTTCTTCGTGCACGGAACCCT 599
|||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 591 GGACTTTTAGTTAAGCTAACACCGTTCTTAGACCGCACTGTTCTTCATGCACGTAACCCT 650
Query 600 CCCTTCC-CTGTTTTTCCTCACGCTGAGTACCAACCACCCCCCTTTCACAACCCTCCGAT 658
|||| || |||||||||| ||| ||||||||||| ||||||| |||||||| | ||||||
Sbjct 651 CCCT-CCTCTGTTTTTCCGCACACTGAGTACCAATCACCCCCATTTCACAATCATCCGAT 709
Query 659 TAAATCCGTGGCTTACAGATCAAATCCAGAATCTGATTCTGCGATTGCCAGTCTCAAGCT 718
|||||| ||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 710 GAAATCCCTGGCTTACAGATCAAATCCGGAATCTGATTCTGCTATTGCCACTCTCAAGCT 769
Query 719 TTCACGTCTCCAACTGAAAGCTCTTAAGGCAAAGGCAGAGATTGCTGATAGTAAGTTCAG 778
||||||||||||||||||||||||| || | |||||||||||||||||||||||||||
Sbjct 770 CACACGTCTCCAACTGAAAGCTCTTAAAGCTAGGGCAGAGATTGCTGATAGTAAGTTCAG 829
Query 779 TACATATGAAGTTCTGGTGGCGCATACCTGGCGTTGTGCTTGCTTT-GCAAATGAAGATT 837
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct 830 TACATATGAAGTTCTGGTGGCGCATACCTGGCGTTGTGCTT-CTTTTGCAAATGAAGACT 888
Query 838 TAAGTGAAGAACACTCGACGAGGTTGCATATAATAATTGATGGGAGGCCAAGACTACAAC 897
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 889 TAAGTGAAGAACATTCGACGAGGTTGCATATAATAATTGATGGGAGGCCGAGACTACAAC 948
Query 898 CGAAGCTTCCACAAGGATACATTGGGAACACTCTCTTTCACGCTCGGCCTGTATCTCAGT 957
| |||||||| ||||||||||||||||||||||||||||||||||| || ||||| | ||
Sbjct 949 CAAAGCTTCCGCAAGGATACATTGGGAACACTCTCTTTCACGCTCGACCGGTATCACCGT 1008
Query 958 TGGGTGATTTTCATAGAGAGAGTTTCAGTGAAACAGTGGAGAGAGTTCATGGCGAAATAA 1017
|||||| ||| || |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1009 TGGGTGCTTTCCACAGAGAGAGTTTCAGTGAAACAGTGGAGAGAGTTCATAGAGAAATAA 1068
Query 1018 GGAAAATGGACAACGAGTACTTGAGATCAGCGATTGACTACTTGGAGAGACATCCTGATC 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 GGAAAATGGACAACGAGTACTTGAGATCAGCGATTGACTACTTGGAGAGACATCCTGATC 1128
Query 1078 TCGATCAGTTAGTTCCTGGTGAAGGTAATCCGATCTTCAGCTGCGCAGCAAACTTCTGCA 1137
|||| || ||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1129 TCGACCAATTAGTTCCTGGTGAAGGTAATACAATCTTCAGCTGCGCAGCAAACTTCTGCA 1188
Query 1138 TCGTCGGTCTAA-CAAAACAGACCGCTTACGAAATGGATTTCGGATGGGGAAGAGCTTTC 1196
||||| |||||| |||| |||||||| ||||||||||||||||||||||||| ||||| |
Sbjct 1189 TCGTCAGTCTAATCAAA-CAGACCGCGTACGAAATGGATTTCGGATGGGGAAAAGCTTAC 1247
Query 1197 TACAAGAGAGCTTCACATGTAAATGAAGGGAAGGGATATGTAACTGGGAGCCCAGACGAA 1256
|||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1248 TACAAGAGAGCTTCACATTTAAATGAAGGGAAGGGATTTGTAACTGGGAACCCAGACGAA 1307
Query 1257 GTAGGGAGCTTGATGCTAACCATGTGCCTGAAGAAGACTCAGCTTGGTAAGTTTCGGAAG 1316
| ||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| |||
Sbjct 1308 GAAGGGAGCATGATGCTAACCATGTGCTTGAAGAAGACTCAGCTTAGTAAGTTTCGAAAG 1367
Query 1317 CTGTTTTATGAGTTTCTCAATGTGTCCGCATTGTGAGAGACAATCACAAGCCTT 1370
|| |||||||||||||||||||| |||||| ||||||| |||||| |||||||
Sbjct 1368 CTATTTTATGAGTTTCTCAATGTCTCCGCACTGTGAGA--CAATCAGAAGCCTT 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5