BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950495 Length=1666 Score E Sequences producing significant alignments: (Bits) Value AT5G57960.1 | Symbols: | GTP-binding protein, HflX | chr5:2346... 2687 0.0 > AT5G57960.1 | Symbols: | GTP-binding protein, HflX | chr5:23462770-23466503 REVERSE LENGTH=2008 Length=2008 Score = 2687 bits (1455), Expect = 0.0 Identities = 1598/1667 (96%), Gaps = 9/1667 (1%) Strand=Plus/Plus Query 3 GCTCCTTCAATCTCCACCATGAGCTCGTTTTACCTTTCTTCTTCTCCAATTTTCAAACTT 62 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5 GCTCCTTCATTCTCCACCATGAGCTCGTTTTACCTTTCTTCTTCTCCAATTTTCAAACTT 64 Query 63 CAGTGGCACGCAAACGC-TAAACCTAAACCCAGTCGTCCTATTGTTTCTCTTCCA-CTCT 120 ||||||||||||||| | |||||||||||||| |||| | || |||||| ||||| || | Sbjct 65 CAGTGGCACGCAAAC-CATAAACCTAAACCCAATCGTGCAATAGTTTCTTTTCCACCT-T 122 Query 121 CTCGTCTTCATGCCAACTGCTATTCGTGGAGATTATCTTGTAACCTTACTCAACATGGTC 180 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 123 CTCGTCTTCATGCCAACTGCTATTCGTGGAGATTATCTTGTAACCTTGCTCAACATGGTA 182 Query 181 TCGAGTTGGAGGAAACTGTTGAGGAAGATGAAATCCCTCAAGTTCTCGAATTACCTACAG 240 | ||||||||||||||||| |||||||||||||||| |||||||||||| ||||| |||| Sbjct 183 TTGAGTTGGAGGAAACTGTGGAGGAAGATGAAATCCTTCAAGTTCTCGACTTACCAACAG 242 Query 241 AGGAGGAGCCAAATTTCGACAAGGAAACGATTGCTTCTCCATCTAAAATGTTGAGGAAGA 300 |||| || ||||| ||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 243 AGGA-GA--CAAATCTCGACAACGAAACGATTGCTTCTCCATCTAAAATGTTGAGGAAGA 299 Query 301 AAAAAGGAGATGAAGAGAGCTTGGACGATAGATTCAAGCTCAGAAATGGAAAGGAGATTT 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 AAAAAGGAGATGAAGAGAGCTTGGACGATAGATTCAAGCTCAGAAATGGAAAGGAGATTT 359 Query 361 TTGAAGAGAAGGCATATCTAGTGGGCGTGGAAAGAAAGGGTGATGGAGAATGTTTGTTTA 420 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 360 TCGAAGAGAAGGCATATCTAGTGGGCGTGGAAAGAAAGGGTGATGGAGAATGCTTGTTTA 419 Query 421 ATATAGAGGAGTCCCTTGAGGAACTAGAACAGCTTGCGGATACTGCTGGGCTTGCAGTGG 480 |||| ||||| || |||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 420 ATATTGAGGAATCTCTTGAGGAGCTAGAACAACTTGCGGATACTGCTGGGCTTGCAGTGG 479 Query 481 TTGGTTCTACTTATCAAAAGCTTGCGTCCCCAAATCCTAGAACATACATTGGATCAGGAA 540 |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 480 TTGGTTCTACTTATCAAAAGCTAGCTTCCCCAAATCCTAGAACATACATTGGATCAGGAA 539 Query 541 AGGTCGCAGAGATAAAAAGTGCTATTAATGCATTGGACGTTGAGACCGTGATATTTGACG 600 |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| Sbjct 540 AGGTCGCAGAGATAAAAAGTGCAATTAATGCTTTGGACGTTGAGACTGTGATATTTGACG 599 Query 601 ATGAACTTTCACCTGGGCAATTGCGTAACCTGGAAAAGGCCTTTGGTGGGGATGTTCGAG 660 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 ATGAACTTTCACCAGGGCAATTGCGTAACCTGGAAAAGGCCTTTGGTGGGGATGTTCGAG 659 Query 661 TTTGTGACCGCACCGCCCTTATCTTGGACATTTTTAACCAAAGGGCTGCAACTCATGAAG 720 |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 660 TTTGTGACCGCACCGCCCTTATCTTGGACATTTTCAACCAAAGGGCCGCAACTCATGAAG 719 Query 721 CAGCCTTGCAGGTTGCTCTAGCACAAATGGAGTACCAGTTACCACGATTAACTAGAATGT 780 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 720 CAGCCTTGCAGGTTGCTCTAGCACAAATGGAGTACCAGTTGCCACGATTAACTAGAATGT 779 Query 781 GGACTCACCTTGAGCGTCAATCTGGTGGACAAGTTAAGGGCATGGGAGAAAAACAAATTG 840 ||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 780 GGACTCATCTTGAGCGTCAATCTGGTGGCCAAGTTAAGGGTATGGGAGAAAAACAAATTG 839 Query 841 AAGTTGATAAGCGAATCTTGCGGACTCAAATTGGAGTTCTCAAAAAGGAGTTGGAATCTG 900 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 840 AAGTTGATAAGCGAATCTTGCGTACTCAAATTGGAGTTCTCAAAAAGGAGTTGGAATCTG 899 Query 901 TAAGAAAGCACCGAAAGCAGTATAGAAGCCGGCGTGTTGCTATACCAGTACCTGTTGTAT 960 |||||||||| || ||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 900 TAAGAAAGCATCGGAAGCAGTATAGAAGCAGGCGTGTTGCTATACCTGTACCTGTTGTAT 959 Query 961 CTTTGGTTGGTTACACAAACGCTGGAAAGAGTACACTATTAAACCAATTGACTGGTGCTA 1020 | ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 960 CCTTGGTCGGTTACACAAACGCTGGAAAGAGTACACTATTGAACCAATTGACTGGTGCTA 1019 Query 1021 ATGTTCTCGCTGAAAATCGTTTGTTTGCGACTCTTGATCCAACTACGAGAAGGGTTCAGA 1080 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1020 ATGTTCTCGCTGAAAATCGTTTGTTTGCAACTCTTGATCCAACTACGAGAAGGGTTCAGA 1079 Query 1081 TGCAAAACGGGAAGGAATTTCTTCTCACAGATACTGTTGGTTTTATCCAAAAGTTACCAA 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 TGCAAAACGGGAAGGAATTTCTTCTCACAGATACTGTTGGTTTTATCCAAAAGTTACCAA 1139 Query 1141 CCACCCTGGTTGCTGCTTTCAGAGCAACACTTGAAGAAATAGCAGAGTCAAGCCTTTTGG 1200 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 CCACTCTGGTTGCTGCTTTCAGAGCAACACTTGAAGAAATAGCAGAGTCAAGCCTTTTGG 1199 Query 1201 TGCATGTTGTTGACATCAGCCACCCACTGGCAGAGCAACAAATAGAAGCTGTGGAAAAGG 1260 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1200 TGCATGTTGTTGACATCAGCCACCCACTGGCAGAGCAACAAATAGAAGCTGTGGAGAAGG 1259 Query 1261 TTATGTCTGAACTCGACGTTTCATCAATTCCAAAGTTGGTCGTGTGGAATAAGGTTGATA 1320 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1260 TTATGTCTGAACTCGACGTTTCATCAATTCCAAAATTGGTCGTGTGGAATAAGGTTGATA 1319 Query 1321 GAGTGGATGATCCTCAAAAGGTCAAGCTGGAAGCAGAG-AAGAGTGGGGATACAATTTGT 1379 |||||||||||||||||||||||||||||||||||||| || | |||||||||||||||| Sbjct 1320 GAGTGGATGATCCTCAAAAGGTCAAGCTGGAAGCAGAGGAA-ACTGGGGATACAATTTGT 1378 Query 1380 ATATCTGCTCTGACTGGAGAAGGACTAGATGACTTCTGCAATGCTGTTCATGAGAAGCTC 1439 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1379 ATATCTGCTCTGACTGGAGAAGGACTAGACGACTTCTGCAATGCTGTTCATGAGAAGCTC 1438 Query 1440 AAGGATTCAATGGTTTGGGTTGAAGCCCTTTTGCCTTTTGATAAGGGGGACCTTCTAAGC 1499 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 1439 AAGGATTCAATGGTTTGGGTTGAAGCCCTTTTGCCATTTGATAAAGGGGACCTTCTAAGC 1498 Query 1500 ACCATACACAAGGTTGGAATGGTGAAAGAAACTGAATATACAGAGAATGGGACGCTCATC 1559 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 1499 ACCATACACAAGGTTGGAATGGTGAAAGAAACTGAATATACAGAGAATGGGACACTTATC 1558 Query 1560 AGGGCTCATGTTCCACTTCGTTTTGCACAGCTGCTTAAACCTATGAGACACTTGGTCAAA 1619 ||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 AGGGCACACGTTCCGCTACGTTTTGCACAGCTGCTTAAACCTATGAGACACTTGGTCAAA 1618 Query 1620 GATACTTCCATAAGCCAAAAAGGGTGAAGCAGAATCATAGCAAGAAC 1666 |||||||| |||||||||| ||| |||| |||||||||||||||||| Sbjct 1619 GATACTTCAATAAGCCAAAGAGGATGAACCAGAATCATAGCAAGAAC 1665 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82328893800 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5