BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950526
Length=673
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1055 0.0
> AT5G58250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 14 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616);
Has 1807 Blast hits to 1807 proteins in 277
species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi -
347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink). | chr5:23559474-23560513 FORWARD LENGTH=861
Length=861
Score = 1055 bits (571), Expect = 0.0
Identities = 646/681 (95%), Gaps = 9/681 (1%)
Strand=Plus/Plus
Query 1 TCAAAAGACTCTAAT---CAGC-AATGTGGAGCGTCACCGGAGCATTGACTGTGGCGGTG 56
|||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 TCAACAGACTCTAATCAGCAGCAAATGTGGAGCGTCACCGGAGCATTGACTGTGGCGGTG 120
Query 57 CCGCCTACCGCCGCCGCTTGCCGTCCAAAACCCTTTCTCGTCTCCTCCTCCCTTCCCAAG 116
|||||||||||||||||||||||| | |||||||||||| ||||||| ||| ||||||||
Sbjct 121 CCGCCTACCGCCGCCGCTTGCCGTACGAAACCCTTTCTCATCTCCTCTTCCTTTCCCAAG 180
Query 117 CAGACAAAGAAACTCCATCTTTGTCCGCCGTCTCTGTCTCTACCTTCATCACATTTCTCC 176
|||||||||||||||||||| | | |||| |||||||||||||| |||||||||||||||
Sbjct 181 CAGACAAAGAAACTCCATCTCTCTTCGCCTTCTCTGTCTCTACCATCATCACATTTCTCC 240
Query 177 TCCTCTTTCAAAACCGCAGCCACCTCCGTCGAGCAACAG---TCGGATAACAAGGGAGAG 233
|||||||||||||||||||| |||||| ||||||||||| || | |||||||||||||
Sbjct 241 TCCTCTTTCAAAACCGCAGCTACCTCCATCGAGCAACAGTCTTCTGTTAACAAGGGAGAG 300
Query 234 AGCATCAAGTACCATTTCCTGGTAGCAAACGCAAAATTCATGCTTGACGAAGAGGAACAC 293
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 301 AGCACCAAGTACCATTTCCTGGTAGCAAACGCTAAATTCATGCTTGACGAAGAGGAGCAC 360
Query 294 TTCCAGGAGCAATTGTTTGAACGTCTCCGTTACTAT-GGTGAGCGTGACTTAGTGCAAGA 352
|||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 361 TTCCAGGAGCAATTGTTTGAACGTCTCCGTTACT-TCGGTGAGCGTGAATTAGTGCAAGA 419
Query 353 CTTTTGGCTTGTGATTGAGCCCAAATTCCTTGACAATTTCCCCAAAATTACTCAAAGACT 412
||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTTCTGGCTTGTCATTGAGCCTAAATTCCTTGACAATTTCCCCAAAATTACTCAAAGACT 479
Query 413 TCGTCGTCCTGCTGTTGCTCTTGTTTCCACCAATGGCTCCTGGATCACGTTTATGAAGTT 472
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 480 TCGTCGTCCTGCTGTTGCTCTTGTTTCCACCAATGGCACCTGGATCACGTTTATGAAGTT 539
Query 473 AAGATTGGATCGTGTTCTGTATGATTCCTTTGAAGCTACATCTCTTGATGAAGCTTTGGC 532
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 AAGATTGGATCGTGTTCTGTATGATTCCTTTGAAGCTACCTCTCTTGATGAAGCTTTGGC 599
Query 533 CTCCAATCCTACCACTCTTGAGTTCGATAAGCCTAAAAATTGGGTGGCGCCATACCCCAA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 CTCCAATCCTACCACTCTTGAGTTCGATAAGCCTAAAAATTGGGTGGCGCCATACCCCAA 659
Query 593 GTATGAACCTGGATGGTGGGATACCTTCTTGCCCAAAGTAACCCAAGAATCTGCAGTATA 652
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 GTATGAACCTGGATGGTGGGATACCTTCTTGCCTAAAGTAACCCAAGAATCTGCAGTATA 719
Query 653 GAACTTTGCCTTTTGTCTTGT 673
||||||||| |||||||||||
Sbjct 720 GAACTTTGCTTTTTGTCTTGT 740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32551727256
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5