BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950641
Length=1721
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59250.1 | Symbols: | Major facilitator superfamily protein... 2892 0.0
> AT5G59250.1 | Symbols: | Major facilitator superfamily protein
| chr5:23903892-23906977 FORWARD LENGTH=1867
Length=1867
Score = 2892 bits (1566), Expect = 0.0
Identities = 1672/1723 (97%), Gaps = 8/1723 (0%)
Strand=Plus/Plus
Query 1 TTGTCTCACTCCGATCCGATCATGGCTTTCGCTGTCTCGGTTCAGTCACATTTCGCAATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 TTGTCTCACTCCGATCCGATCATGGCTTTCGCTGTCTCGGTTCAGTCACATTTCGCAATC 105
Query 61 AGAGAC-TTAAAACGAGACCAGTTCAAGAAGAACCCATCTCCGCGTACTTTCTGCTCGTG 119
|||| | |||||||||||||| ||| |||||||| ||||| |||||||||||||||||
Sbjct 106 AGAG-CGTTAAAACGAGACCACTTC---AAGAACCCTTCTCCTCGTACTTTCTGCTCGTG 161
Query 120 TTTTAAATCGAGGTCTGACTCGTCTTACCTAAGTTTAAAGGAACGTACTTGCTTGGTTTC 179
||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 162 TTTTAAATCGAGGCCTGACTCGTCTTACCTTAGTTTAAAGGAACGTACTTGCTTCGTTTC 221
Query 180 CAAGCTGGGTTTAGTCACTACTAGATACAGAGC-TAAATTCCAGGTCGGAGCTGGGACGG 238
||| | ||||||||||||||||||||||||| | || ||||||||||||||||| |||||
Sbjct 222 CAAACCGGGTTTAGTCACTACTAGATACAGA-CATATATTCCAGGTCGGAGCTGAGACGG 280
Query 239 GAGGAGAGTTAGCCGACGGTGGAGAAGTAGCTGATTCGATTGCTTCTGATGCATTAGAGT 298
|||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 281 GAGGAGAGTTCGCCGACAGTGGAGAAGTAGCTGATTCGCTTGCTTCTGATGCACCAGAGT 340
Query 299 CATTTTCTTGGTCTTCCGTGATACTCCCGTTTATCTTCCCGGCTTTGGGAGGACTGTTGT 358
|||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 341 CATTTTCTTGGTCTTCTGTGATACTCCCGTTTATCTTCCCGGCTTTGGGAGGATTATTGT 400
Query 359 TCGGGTATGACATTGGGGCCACCTCTGGTGCTACGCTCTCACTTCAGTCACCTGTGCTTA 418
| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||
Sbjct 401 TTGGGTATGACATTGGGGCTACCTCCGGTGCTACGCTCTCACTTCAGTCACCTGCGCTTA 460
Query 419 GCGGAACTACATGGTTTAACTTCTCACCTGTTCAGCTAGGACTTGTGGTTAGCGGATCCT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 GCGGAACTACATGGTTTAACTTCTCACCTGTTCAGCTAGGACTTGTGGTTAGCGGATCCT 520
Query 479 TATATGGAGCCCTTCTTGGCTCAATTTCTGTCTATGGCGTTGCTGATTTCCTTGGAAGAA 538
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TGTATGGAGCCCTTCTTGGCTCAATTTCTGTCTATGGCGTTGCTGATTTCCTTGGAAGAA 580
Query 539 GGCGGGAACTTATTATAGCTGCTGTTCTCTATCTCCTCGGGTCTCTGATTACTGGCTGTG 598
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 581 GGCGGGAACTTATTATAGCTGCTGTTCTCTATCTCCTCGGGTCTCTGATCACTGGCTGTG 640
Query 599 CCCCTGATCTTAATATTCTCTTAGTTGGAAGGCTTCTCTATGGTTTTGGTATTGGTTTGG 658
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 641 CCCCTGATCTTAATATTCTCTTAGTTGGAAGGCTTCTCTATGGCTTTGGTATTGGTTTGG 700
Query 659 CAATGCATGGGGCTCCCCTCTATATCGCTGAGACATGCCCATCTCAAATCCGGGGAACTT 718
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 701 CAATGCATGGGGCTCCCCTCTATATTGCTGAGACATGCCCATCTCAAATCCGTGGAACTT 760
Query 719 TGATATCTCTGAAAGAACTCTTCATCGTATTGGGAATTTTGTTGGGTTTTTCTGTTGGAA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TGATATCTCTGAAAGAACTCTTCATCGTATTGGGAATTTTGTTGGGTTTTTCTGTTGGAA 820
Query 779 GCTTCCAGATTGATGTAGTTGGAGGGTGGCGTTACATGTATGGATTTGGTACGCCTGTTG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 GCTTCCAGATTGATGTAGTTGGAGGGTGGCGTTACATGTATGGATTTGGTACGCCTGTTG 880
Query 839 CTTTGCTGATGGGACTAGGCATGTGGAGTCTCCCTGCATCTCCTCGCTGGTTGCTGCTTA 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 CTTTGCTGATGGGACTAGGCATGTGGAGTCTCCCTGCATCTCCTCGCTGGTTGCTGCTTA 940
Query 899 GAGCTGTCCAAGGTAAAGGACAATTACAAGAGTACAAAGAGAAGGCCATGCTTGCCCTCA 958
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 941 GAGCTGTCCAAGGTAAAGGACAATTACAAGAATACAAAGAGAAGGCCATGCTTGCCCTCA 1000
Query 959 GCAAATTACGTGGCAGACCTCCAGGTGATAAAATTTCGGAGAAGTTAGTAGATGATGCCT 1018
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 1001 GCAAATTACGTGGCAGACCTCCAGGTGATAAAATCTCAGAGAAGTTGGTAGATGATGCCT 1060
Query 1019 ATTTATCTGTGAAAACGGCCTATGAAGATGAGAAATCTGGGGGAAACTTCCTGGAAGTAT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 ATTTATCTGTGAAAACGGCCTATGAAGATGAGAAATCTGGGGGAAACTTCCTGGAAGTAT 1120
Query 1079 TCCAAGGGCCTAATTTGAAAGCTTTGACAATTGGTGGAGGTTTAGTCCTCTTCCAACAGA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 TCCAAGGGCCTAATTTGAAAGCTTTGACAATTGGTGGAGGTTTAGTCCTCTTCCAACAGA 1180
Query 1139 TAACTGGACAGCCTAGTGTTCTTTATTATGCGGGTTCGATTCTTCAGACTGCTGGATTCT 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 TAACTGGACAGCCTAGTGTTCTTTATTATGCGGGTTCGATTCTTCAGACTGCTGGATTCT 1240
Query 1199 CTGCTGCTGCTGATGCAACTCGAGTCTCTGTTATTATTGGTGTTTTCAAGTTACTGATGA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 CTGCTGCTGCTGATGCAACTCGAGTCTCTGTTATTATTGGTGTTTTCAAGTTACTGATGA 1300
Query 1259 CATGGGTAGCTGTTGCGAAAGTTGATGATCTCGGCAGACGACCATTACTGATTGGAGGTG 1318
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1301 CATGGGTAGCTGTTGCGAAAGTTGATGATCTCGGCAGACGACCTTTACTGATTGGAGGTG 1360
Query 1319 TCAGCGGCATTGCGTTGTCCTTGTTTCTACTGTCAGCATACTACAAGTTTCTCGGAGGCT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 TCAGCGGCATTGCGTTGTCCTTGTTTCTACTGTCAGCATACTACAAGTTTCTCGGAGGCT 1420
Query 1379 TTCCCCTGGTCGCCGTTGGTGCACTGCTTCTCTATGTTGGTTGTTACCAGATCTCATTTG 1438
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 TTCCCCTTGTCGCTGTTGGTGCACTGCTTCTCTATGTTGGTTGTTACCAGATCTCATTTG 1480
Query 1439 GACCCATCAGCTGGCTAATGGTGTCAGAGATTTTCCCGCTTCGCACAAGAGGGAGAGGGA 1498
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1481 GACCCATCAGCTGGCTAATGGTGTCAGAGATTTTCCCGCTCCGCACAAGAGGGAGAGGGA 1540
Query 1499 TCAGTCTTGCAGTTCTTACAAACTTTGGCTCCAATGCTATTGTGACCTTTGCATTTTCAC 1558
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1541 TCAGTCTTGCAGTTCTTACAAACTTTGGCTCCAATGCTATTGTGACATTTGCATTTTCAC 1600
Query 1559 CCTTAAAGGAATTTCTTGGAGCCGAGAATCTTTTCCTTCTCTTTGGGGCCATAGCACTGG 1618
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1601 CTTTAAAGGAATTTCTTGGAGCCGAGAATCTTTTCCTTCTCTTTGGGGGCATAGCACTGG 1660
Query 1619 TATCACTGCTGTTTGTGATACTAGTAGTTCCAGAGACCAAGGGTCTCAGCTTGGAAgaaa 1678
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 TATCACTGCTGTTTGTAATACTAGTAGTTCCAGAGACCAAGGGTCTCAGCTTGGAAGAAA 1720
Query 1679 ttgaatcaaaaatcttgaaatgaaatgttgaaaaaaCATGTTT 1721
||||||||||||||||||| ||||| |||||| || ||| |||
Sbjct 1721 TTGAATCAAAAATCTTGAAGTGAAACGTTGAAGAA-CATATTT 1762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85089923775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5