BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950674
Length=382
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59310.1 | Symbols: LTP4 | lipid transfer protein 4 | chr5:2... 575 1e-163
AT5G59320.1 | Symbols: LTP3 | lipid transfer protein 3 | chr5:2... 355 2e-97
> AT5G59310.1 | Symbols: LTP4 | lipid transfer protein 4 | chr5:23925085-23925852
REVERSE LENGTH=630
Length=630
Score = 575 bits (311), Expect = 1e-163
Identities = 360/384 (94%), Gaps = 2/384 (1%)
Strand=Plus/Plus
Query 1 CCAAAAAAG-A-AGCAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCCTTGTTTT 58
|||||| || | |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 59 CCAAAAGAGAAGAGCAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCTTTGTTTT 118
Query 59 GACTGTGTTCGTCGTTGCATCAGTAGATGCAGCAATCACATGCGGCACAGTGGCGAGTAG 118
||| |||||| ||||||||||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct 119 GACAGTGTTCATCGTTGCATCAGTGGATGCAGCAATAACATGTGGCACAGTGGCAAGTAG 178
Query 119 CTTGAGTCCGTGTCTAAGCTACCTATCAAAAGGTGGGGTGGTGCCACCTCCGTGCTGTGC 178
||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 179 CTTGAGTCCATGTCTAGGCTACCTATCAAAGGGTGGGGTGGTGCCACCTCCGTGCTGTGC 238
Query 179 AGGAGTCAAAAAGTTGAACGGTCTGGCTCAAACCACACCGGACCGCCAACAAGCATGCCG 238
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
Sbjct 239 AGGAGTCAAAAAGTTGAACGGTATGGCTCAAACCACACCCGACCGCCAACAAGCATGCAG 298
Query 239 GTGCTTACAGGCCGCTGCAAAAGGGGTTAATCCAAGTCTAGCCTCTGGCCTTCCTGGAAA 298
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATGCTTACAGTCCGCTGCAAAAGGGGTTAATCCAAGTCTAGCCTCTGGCCTTCCTGGAAA 358
Query 299 GTGTGGTGTTAGCATCCCCTATCCCATCTCCACGAGCACTAACTGCGCAACCATCAAGTG 358
||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 359 GTGCGGTGTTAGCATCCCCTATCCCATCTCCACGAGCACCAACTGCGCCACCATCAAGTG 418
Query 359 AAGTGGGGGATTACGACATGATTT 382
|||||||| || ||||||| ||||
Sbjct 419 AAGTGGGGAATAACGACATCATTT 442
> AT5G59320.1 | Symbols: LTP3 | lipid transfer protein 3 | chr5:23928971-23929745
FORWARD LENGTH=681
Length=681
Score = 355 bits (192), Expect = 2e-97
Identities = 318/376 (85%), Gaps = 19/376 (5%)
Strand=Plus/Plus
Query 4 AAAAAGAAG--CAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCCTTGTTTTGAC 61
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 62 AAAAAGAAGTTCAAACACAATGGCTTTCGCTTTGAGGTTCTTCACATGCCTTGTTTTAAC 121
Query 62 TGTGTTCGTCGTTGCATCAGTAGATGCAGCAATCACATGCGGCACAGTGGCGAG-TAGCT 120
|||| | | ||||||||||| ||||| |||||| |||| ||||||||||| || |||||
Sbjct 122 GGTGTGCATAGTTGCATCAGTCGATGCTGCAATCTCATGTGGCACAGTGGC-AGGTAGCT 180
Query 121 TGAG-TCCGTGT-CTAAGCTACCTATCAAAAGGTGGGGTGGTGCCACCTCCGTGCTGTGC 178
|| | ||| ||| | || ||| ||||||||||||||| ||||||||||| | || |||||
Sbjct 181 TG-GCTCCATGTGC-AACCTATCTATCAAAAGGTGGGTTGGTGCCACCTTCATGTTGTGC 238
Query 179 AGGAGTCAAAAAGTTGAACGGTCTGGCTCAAACCACACCGGACCGCCAACAAGCATGCCG 238
||||||||||| |||||| || ||||| |||||||||| |||||||||||||| ||| |
Sbjct 239 AGGAGTCAAAACTTTGAACAGTATGGCTAAAACCACACCAGACCGCCAACAAGCTTGCAG 298
Query 239 GTGCTTACAGGCCGCTGCAAA-AGG------GGT-T-AATCCAAGTCTAGCCTCTGGCCT 289
||| | ||| || |||| || || ||| | || ||||||||||||||||||||
Sbjct 299 ATGCATCCAGTCCACTGCGAAGAGCATTTCTGGTCTCAACCCAAGTCTAGCCTCTGGCCT 358
Query 290 TCCTGGAAAGTGTGGTGTTAGCATCCCCTATCCCATCTCCACGAGCACTAACTGCG-CAA 348
|||||||||||| ||||||||||| || ||||| ||||||| ||||||||||||| |||
Sbjct 359 TCCTGGAAAGTGCGGTGTTAGCATTCCATATCCAATCTCCATGAGCACTAACTGCAACAA 418
Query 349 CCATCAAGTGAAGTGG 364
| |||||||||| |||
Sbjct 419 C-ATCAAGTGAAATGG 433
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17995854142
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5