BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg950712

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G59660.1 | Symbols:  | Leucine-rich repeat protein kinase fa...   298    3e-80
  AT5G59670.1 | Symbols:  | Leucine-rich repeat protein kinase fa...  86.1    3e-16


> AT5G59660.1 | Symbols:  | Leucine-rich repeat protein kinase 
family protein | chr5:24035687-24039979 FORWARD LENGTH=2559
Length=2559

 Score =  298 bits (161),  Expect = 3e-80
 Identities = 185/197 (94%), Gaps = 0/197 (0%)
 Strand=Plus/Plus

Query  187  TACATGAAAGATGTCTATGATCGCACATGGGTATCGTATGGAGCCAGTTTTCAGACGGGC  246
            |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| 
Sbjct  499  TACATGAAAGATGTATATGATCGCACATGGGTATCATATGGAGCCAGTTTTCGGACGGGA  558

Query  247  TGGACACAAATTTACACCGCTCTTGAAGTGAACAATTCCAACAATTATGCTCCACCAAAA  306
            ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  559  TGGACCCAGATTTATACCGCTCTTGAAGTGAACAATTCCAACAATTATGCTCCACCGAAA  618

Query  307  GATGCGCTAAAAAATGCTGCCATACCGACTAATGCCAGTGCGCCATTGAAGATTGAATGG  366
            |||||||||| ||||||||||| |||||||||||||||||| ||||||| ||||||||||
Sbjct  619  GATGCGCTAAGAAATGCTGCCACACCGACTAATGCCAGTGCACCATTGACGATTGAATGG  678

Query  367  CCTTCAGGAAGTCCCAG  383
            |||||||||||||||||
Sbjct  679  CCTTCAGGAAGTCCCAG  695


 Score =  231 bits (125),  Expect = 3e-60
 Identities = 140/147 (95%), Gaps = 2/147 (1%)
 Strand=Plus/Plus

Query  37   GGATTCATCAGTTTGGATTGCGGGCTACCC-GCGAATGAACAGTCTCCTTATGAAGAGAG  95
            ||||||||||||||||||||||| || ||| |||||||||| ||||||||||||||||||
Sbjct  118  GGATTCATCAGTTTGGATTGCGGACT-CCCTGCGAATGAACTGTCTCCTTATGAAGAGAG  176

Query  96   TTTCACTGGACTGCGGTTCTCTTCAGATGAAAAGTTCGTACGTAGTGGAAAAAACGGTCG  155
            |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct  177  TTTCACTGGACTGCGGTTCTCTTCGGATGAAAAGTTCATACGTAGTGGAAAAAACGGTCG  236

Query  156  AATCCGAGAAAATCCTGAGGGATACGC  182
            |||||||||||||||| ||||||||||
Sbjct  237  AATCCGAGAAAATCCTCAGGGATACGC  263


 Score = 54.7 bits (29),  Expect = 8e-07
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  370  TCAGGAAGTCCCAGGGACCAATATTACTT  398
            |||||||||||||||||||||||||||||
Sbjct  696  TCAGGAAGTCCCAGGGACCAATATTACTT  724


> AT5G59670.1 | Symbols:  | Leucine-rich repeat protein kinase 
family protein | chr5:24041494-24045652 FORWARD LENGTH=2825
Length=2825

 Score = 86.1 bits (46),  Expect = 3e-16
 Identities = 107/135 (79%), Gaps = 10/135 (7%)
 Strand=Plus/Plus

Query  40   TTCATCAGTTTGGATTGCGGGCTACCCGCGAATGA-ACAGTCTCCTTATGA-AGAGAGTT  97
            ||||||||||||||||||||||||||||| ||||| || |||||||||| | ||||| | 
Sbjct  126  TTCATCAGTTTGGATTGCGGGCTACCCGCAAATGAGAC-GTCTCCTTAT-ACAGAGACTC  183

Query  98   TCACTGGACTGCGGTTCTCTTCAGATGAAA-AGTTCGTAC-GTAGTGGAAAAAAC-GGTC  154
              ||||| |||  ||||||||| || | || | ||| | | | || ||||||| | ||| 
Sbjct  184  AAACTGGTCTGTTGTTCTCTTCGGACGCAACA-TTCATCCAG-AGCGGAAAAA-CTGGTA  240

Query  155  GAATCCGAGAAAATC  169
            || ||| || |||||
Sbjct  241  GAGTCCAAGCAAATC  255



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5