BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950712 Length=465 Score E Sequences producing significant alignments: (Bits) Value AT5G59660.1 | Symbols: | Leucine-rich repeat protein kinase fa... 298 3e-80 AT5G59670.1 | Symbols: | Leucine-rich repeat protein kinase fa... 86.1 3e-16 > AT5G59660.1 | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:24035687-24039979 FORWARD LENGTH=2559 Length=2559 Score = 298 bits (161), Expect = 3e-80 Identities = 185/197 (94%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 187 TACATGAAAGATGTCTATGATCGCACATGGGTATCGTATGGAGCCAGTTTTCAGACGGGC 246 |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| Sbjct 499 TACATGAAAGATGTATATGATCGCACATGGGTATCATATGGAGCCAGTTTTCGGACGGGA 558 Query 247 TGGACACAAATTTACACCGCTCTTGAAGTGAACAATTCCAACAATTATGCTCCACCAAAA 306 ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 559 TGGACCCAGATTTATACCGCTCTTGAAGTGAACAATTCCAACAATTATGCTCCACCGAAA 618 Query 307 GATGCGCTAAAAAATGCTGCCATACCGACTAATGCCAGTGCGCCATTGAAGATTGAATGG 366 |||||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||| Sbjct 619 GATGCGCTAAGAAATGCTGCCACACCGACTAATGCCAGTGCACCATTGACGATTGAATGG 678 Query 367 CCTTCAGGAAGTCCCAG 383 ||||||||||||||||| Sbjct 679 CCTTCAGGAAGTCCCAG 695 Score = 231 bits (125), Expect = 3e-60 Identities = 140/147 (95%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 37 GGATTCATCAGTTTGGATTGCGGGCTACCC-GCGAATGAACAGTCTCCTTATGAAGAGAG 95 ||||||||||||||||||||||| || ||| |||||||||| |||||||||||||||||| Sbjct 118 GGATTCATCAGTTTGGATTGCGGACT-CCCTGCGAATGAACTGTCTCCTTATGAAGAGAG 176 Query 96 TTTCACTGGACTGCGGTTCTCTTCAGATGAAAAGTTCGTACGTAGTGGAAAAAACGGTCG 155 |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 177 TTTCACTGGACTGCGGTTCTCTTCGGATGAAAAGTTCATACGTAGTGGAAAAAACGGTCG 236 Query 156 AATCCGAGAAAATCCTGAGGGATACGC 182 |||||||||||||||| |||||||||| Sbjct 237 AATCCGAGAAAATCCTCAGGGATACGC 263 Score = 54.7 bits (29), Expect = 8e-07 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 370 TCAGGAAGTCCCAGGGACCAATATTACTT 398 ||||||||||||||||||||||||||||| Sbjct 696 TCAGGAAGTCCCAGGGACCAATATTACTT 724 > AT5G59670.1 | Symbols: | Leucine-rich repeat protein kinase family protein | chr5:24041494-24045652 FORWARD LENGTH=2825 Length=2825 Score = 86.1 bits (46), Expect = 3e-16 Identities = 107/135 (79%), Gaps = 10/135 (7%) Strand=Plus/Plus Query 40 TTCATCAGTTTGGATTGCGGGCTACCCGCGAATGA-ACAGTCTCCTTATGA-AGAGAGTT 97 ||||||||||||||||||||||||||||| ||||| || |||||||||| | ||||| | Sbjct 126 TTCATCAGTTTGGATTGCGGGCTACCCGCAAATGAGAC-GTCTCCTTAT-ACAGAGACTC 183 Query 98 TCACTGGACTGCGGTTCTCTTCAGATGAAA-AGTTCGTAC-GTAGTGGAAAAAAC-GGTC 154 ||||| ||| ||||||||| || | || | ||| | | | || ||||||| | ||| Sbjct 184 AAACTGGTCTGTTGTTCTCTTCGGACGCAACA-TTCATCCAG-AGCGGAAAAA-CTGGTA 240 Query 155 GAATCCGAGAAAATC 169 || ||| || ||||| Sbjct 241 GAGTCCAAGCAAATC 255 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22103024680 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5