BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950837
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60850.1 | Symbols: OBP4 | OBF binding protein 4 | chr5:2448... 1441 0.0
AT1G51700.1 | Symbols: ADOF1, DOF1 | DOF zinc finger protein 1 ... 165 7e-40
> AT5G60850.1 | Symbols: OBP4 | OBF binding protein 4 | chr5:24480449-24481873
FORWARD LENGTH=1425
Length=1425
Score = 1441 bits (780), Expect = 0.0
Identities = 917/981 (93%), Gaps = 18/981 (2%)
Strand=Plus/Plus
Query 1 TCTTTATCATC-TCTCTAAGAAATGCAAGATATTCATGATTACTCGATGACcggagttgg 59
||||||||||| ||||| |||||||||||||||||||||| ||| |||| |||||||||
Sbjct 108 TCTTTATCATCATCTCTTCGAAATGCAAGATATTCATGATTTCTCCATGAACGGAGTTGG 167
Query 60 cggtggaggaggtggaggagggaggtttttcggtggaggaatgggcggtggaggaggtgg 119
||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 168 TGGTGGGGGAGGAGGAGGAGGGAGGTTTTTCGGTGGAGGAATCGGCGGCGGAGGAGGTGG 227
Query 120 agatcggaggatgagagCTCATCAGAACAATATACTTAACCATCATCAATCTCTCAAGTG 179
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TGATCGAAGGATGAGAGCTCATCAGAACAATATACTTAACCATCATCAATCTCTCAAGTG 287
Query 180 TCCTCGTTGTAATTCTCTTAACACAAAGTTCTGTTACTACAACAATTACAATCTTTCTCA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TCCTCGTTGTAATTCTCTTAACACAAAGTTCTGTTACTACAACAATTACAATCTTTCTCA 347
Query 240 GCCTCGACACTTTTGCAAGAACTGTCGTCGTTACTGGACTAAAGGCGGTGTTCTCCGTAA 299
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 348 GCCTCGTCACTTTTGCAAGAACTGTCGTCGTTACTGGACTAAAGGTGGTGTTCTCCGTAA 407
Query 300 CGTTCCCATCGGAGGTGGTTGCCGAAAAGCTAAACGTTCGAAAACAAAACAGGTTCCGTC 359
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 408 CGTTCCCGTCGGAGGTGGTTGCCGGAAAGCTAAACGTTCGAAAACAAAACAGGTTCCGTC 467
Query 360 GTCGTCCTCAGCTGACAAACCAACGACGACGCAAGATGATCATCACGTGGAGGAGAAATC 419
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GTCGTCATCAGCCGACAAACCAACGACGACGCAAGATGATCATCACGTGGAGGAGAAATC 527
Query 420 GAGTACGGGATCTCACTCTAGCAGCGAGAGCTCTTCTCTCACTGCTTCCAACTCTACCGC 479
|||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 528 GAGTACAGGATCTCACTCTAGCAGCGAGAGCTCTTCTCTCACCGCTTCTAACTCTACCAC 587
Query 480 CGTCCCCGCCGTCTCCGTCACCGCGGCGGCAGAGGTTGCTTCGTCGGTTATTCCCGGGTC 539
|||| ||||||||||||||||||||||||| || |||||||||||||||||||| || |
Sbjct 588 CGTCGCCGCCGTCTCCGTCACCGCGGCGGCGGAAGTTGCTTCGTCGGTTATTCCAGG-T- 645
Query 540 GGTTATTCCCGGTTTTAATATGCCTAATATGAAACTGTACGGGAACGGGATCGAGTGGTC 599
|| | | | |||||||||||||||| | ||||| |||||||||||||||||
Sbjct 646 --TT-T----G-----A-TATGCCTAATATGAAAATTTACGGTAACGGGATCGAGTGGTC 692
Query 600 GACGTTACTCGGACAAGGCTCATCGGACGGTGGAGTTTTCTCTGAGATCGGGGGTTTTAC 659
||||||||| |||||||||||||||| |||||| |||||||| |||||||| |||||| |
Sbjct 693 GACGTTACTTGGACAAGGCTCATCGGCCGGTGGTGTTTTCTCGGAGATCGGTGGTTTTCC 752
Query 660 GGCGGCGTCGGCTATTGAAACGACACCGTTTGGATTCGGGGGTAAATTCGTAAATCAAGA 719
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 753 GGCGGTTTCAGCTATTGAAACTACACCGTTTGGATTCGGGGGTAAATTCGTAAATCAAGA 812
Query 720 CGATCATCTGAAGTTAGAAGGTGAAACTGTACAGCAGCAGCAGTTTGGAGATCGAACGGC 779
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 813 TGATCATCTGAAGTTAGAAGGTGAAACTGTACAGCAGCAACAGTTTGGAGATCGAACGGC 872
Query 780 TCAGGTTGAGTTTCAAGGAAGATCTTCTGATCCGAATATGGGATTTGAACCGTTGGATTG 839
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 873 TCAGGTTGAGTTTCAAGGAAGATCTTCGGATCCGAATATGGGATTTGAACCGTTGGATTG 932
Query 840 GGGAAGTGGCGGAGGAGATCAAACACTGTTTGATCTAACCAGCACCGTTGATCATGCATA 899
|||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 933 GGGAAGTGGCGGTGGAGATCAAACACTGTTTGATTTAACCAGTACCGTTGATCATGCATA 992
Query 900 CTGGAGTCAAAGTCAATGGACGTCGTCTGACCAAGATCAGAATGGTCTCTACCTTCCTTG 959
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 993 CTGGAGTCAAAGTCAATGGACGTCGTCTGACCAAGATCAGAGTGGTCTCTACCTTCCTTG 1052
Query 960 ATTCTCTGATCATAGCTTCTT 980
||||| ||||||||||||||
Sbjct 1053 ATTCT--GATCATAGCTTCTT 1071
> AT1G51700.1 | Symbols: ADOF1, DOF1 | DOF zinc finger protein
1 | chr1:19174070-19175189 FORWARD LENGTH=1120
Length=1120
Score = 165 bits (89), Expect = 7e-40
Identities = 126/144 (88%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 175 AAGTGTCCTCGTTGTAATTCTCTTAACAC-AAAGTTCTGTTACTACAACAATTACAATCT 233
||||||||||| ||| | || | |||||| ||| ||||||||||||||||||||||||||
Sbjct 296 AAGTGTCCTCGCTGTGACTCACCTAACACTAAA-TTCTGTTACTACAACAATTACAATCT 354
Query 234 TTCTCAGCCTCGACACTTTTGCAAGAACTGTCGTCGTTACTGGACTAAAGGCGGTGTTCT 293
|| ||||| || ||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 355 GTCACAGCCCCGTCACTTTTGCAAAAACTGTCGTCGTTACTGGACTAAAGGCGGTGCTCT 414
Query 294 CCGTAACGTTCCCATCGGAGGTGG 317
|||||| | ||| |||| |||||
Sbjct 415 TCGTAACATCCCCGTCGGTGGTGG 438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47973610385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5