BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950890 Length=1020 Score E Sequences producing significant alignments: (Bits) Value AT5G61340.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1600 0.0 > AT5G61340.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24662004-24663117 REVERSE LENGTH=1114 Length=1114 Score = 1600 bits (866), Expect = 0.0 Identities = 973/1025 (95%), Gaps = 6/1025 (1%) Strand=Plus/Plus Query 1 AAG-AAATAGCAAAAACTAGAATGAAGAAGACAATGGAGGATCCAAGCAAGATCATGAGA 59 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 53 AAGAAAATAGCAAAAACTAGAATGAAGAAGACAATGGAGGATCCAAGCAAGATCATGAGA 112 Query 60 AGGTCAATTCACACTTTCCTCCAAAACTACCACCGTGTCACCACCGCAGCCGCCGTGGCc 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 113 AGGTCAATTCACACTTTCCTCCAAAACTACCACCGTGTCACCACCGCAGCCGCCGTGGCC 172 Query 120 ctccctttctccgccggtctcctcctctctcagcctttcttctcttcttcctcttctatc 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 173 CTCCCTTTCTCCGCCGGTCTCCTCCTCTCTCAGCCTTTCTTCTCTTCTTCCTCTTCCACC 232 Query 180 cttcACATGAGGCTTAACATGCTCTTTCGCGGAGCGGGTTTCTCTTCTTCTCACAATTTC 239 |||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| Sbjct 233 CTTCACATGAGGCTTAACATGCTCTTCCGCGGAGCGGGTTTCTCTTCTTCTCATGACTTC 292 Query 240 TTCAATATCTTAAGCCTTAAACTCTCACAAACCCTATCTTCCTCTTTATTCACTCTTCCT 299 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 293 TTCAACATCTTAAGCCTTAAACTCTCACAAACCCTATCTTCCTCTTTATTCACTCTTCCT 352 Query 300 TTCTCCCTCACTTTCCTCCTTTTATCCAAAGCTTACGTCATCAAACTTCTATCAAACAAT 359 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 353 TTCTCCCTCACATTCCTCCTTTTATCCAAAGCTTACGTCATCAAACTTCTATCAAACAAT 412 Query 360 CACTCTGCAGATTCATC-TGT-TTTT-TACCTCCGGCTTCTCAAAACTTACGTTTGTAAC 416 |||||||||||||| || | | |||| ||||||||||||||||||||||||||||| ||| Sbjct 413 CACTCTGCAGATTCCTCCTCTGTTTTCTACCTCCGGCTTCTCAAAACTTACGTTTGCAAC 472 Query 417 TTCTTCTTCCTTCTCTCTGCAAACGCCTCTGCTTTTGCTCTGTTTTTCGTAGCATACAAT 476 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 473 TTCTTCTTCCTTCTCTCTGCAAACGCCTCTGCTTTTGCTCTGTTTTTCTTAGCATACAAT 532 Query 477 ACCCTTGAAGCTTTTGGATTCTCTTCAAGAAACTTCTACACTTTCCTCTCCGTATGCTCA 536 ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 533 ACCCTTGAAGCCTTTGGATTCTCTTCAAGAAACTTCTACACTTTCCTCTCCCTATCCTCA 592 Query 537 CCGATTATCTACTCGATTATCATCGCAAACGCCTTTGTCATCTCCAATCTAGCCTTGGTT 596 | || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 593 GCAATCATCTACTCAATTATCATCGCAAACGCCTTTGTCATCTCTAATCTAGCCTTGGTT 652 Query 597 TCATCACCTTCTTCTTCCTCAGGAGGATACACCAACATTCTCAAGGCGTGTCTTCTTATT 656 |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||| Sbjct 653 TCATCACCTTCTTCTTCCTCGGGAGGATACACAAACATCCTCAAGGCGTGTCTTCTGATT 712 Query 657 CACGGAAGAAGTTCAACAGCATTGGCTATTGCTCTTCCTACCAATCTTGGCTTAGCAGGA 716 | |||||||| |||||||||| ||||| ||||||| ||||||||||| |||||||||||| Sbjct 713 CGCGGAAGAAATTCAACAGCAATGGCTCTTGCTCTGCCTACCAATCTCGGCTTAGCAGGA 772 Query 717 GTCGAAGCCTTGTTTCAGTACAGGGTCTTGAGATCTTATTACAAAGGAGACAGAGATATC 776 ||||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||| Sbjct 773 GTCGAAGCCTTGTTTCAGTACCGAGTCATGAGATCTTATTACAATGGAGACAGAGATATC 832 Query 777 ACATCCATAGCTCTCGAAGGAACCTTCATAGCTTACTTATACGCTCTCTTCTTGGTTCTT 836 | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 833 ATATCCATAGCTCTTGAAGGAACCTTCATAGCTTACTTATACGCTCTCTTCTTGGTTCTT 892 Query 837 GACACGATAGTCAACTTCCTTTTTTACCAGAGCTGCATCAAGAACGAGGAAGATCAAAAG 896 ||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 893 GACACCATAGTCAACTTCCTCTTTTACCAGAGCTGCATCAAAAACGAGGAAGATCAAAAT 952 Query 897 ATCGGTAGAGAAGACGAGTATTCGATCAAGATCCAAATCAGCGAAACAGAGAACACAAAG 956 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 953 ATCGGTAGAGAAGACGAGTATTCAATCAAGATCCAAATCAGCGAAACAGAGAACACAAAG 1012 Query 957 ATACACATCAATGGATCAAAGAATTTACAAGAAATATTGTGACTTTCTTGAT-TTGGTTG 1015 ||||||||||| ||||||||||| || |||||||| |||||||| ||||| | ||||||| Sbjct 1013 ATACACATCAAAGGATCAAAGAACTTGCAAGAAATCTTGTGACTCTCTTG-TGTTGGTTG 1071 Query 1016 ATGTA 1020 ||||| Sbjct 1072 ATGTA 1076 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49982976265 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5