BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950896 Length=2241 Score E Sequences producing significant alignments: (Bits) Value AT5G61400.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2704 0.0 AT5G61410.1 | Symbols: RPE, EMB2728 | D-ribulose-5-phosphate-3-... 211 2e-53 > AT5G61400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24681550-24683514 FORWARD LENGTH=1965 Length=1965 Score = 2704 bits (1464), Expect = 0.0 Identities = 1827/1994 (92%), Gaps = 58/1994 (3%) Strand=Plus/Plus Query 100 ATGTTGAAGCATCTGTTTCTCCAACATAGAAGAACTTCTTCAGCTTACTTCTACAAGTTT 159 |||||||||| |||| ||| ||||||| |||| | |||| |||||| | ||||||| Sbjct 1 ATGTTGAAGCTTCTGCTTCCCCAACAT---AGAA---CATCAGTTTACTTGTTCAAGTTT 54 Query 160 CAATTTTTCACCTTTAGATTGTTCTCTCAGTCACCTTATCTGCCAAATTCAGCATCTTCG 219 |||||||||| ||||||||| || ||||| || |||| |||| ||||||| ||| Sbjct 55 CAATTTTTCAACTTTAGATTCTTATCTCAATCTCCTTCTCTGTCAAATTCGGCA------ 108 Query 220 TTGCTCTCTTTGTCGTCGTCTTCTTCTTCGAGTCTGGCTGAAGCAATACTGAAATGCAGA 279 | || || | | || ||||||||||||||||||||||||||||||||||||||| Sbjct 109 -T-CT-TC----T--T--TC-TCTTCTTCGAGTCTGGCTGAAGCAATACTGAAATGCAGA 156 Query 280 TCAGCGGAAGAAGCGTTCAAGCTGTTCGAAACGTCTTCGATTTCTCG-GCTCTCGAAGAC 338 |||||||||||||||||||||||||||||||||||||||| ||||| | |||| ||| | Sbjct 157 TCAGCGGAAGAAGCGTTCAAGCTGTTCGAAACGTCTTCGAGATCTCGAG-TCTCCAAGTC 215 Query 339 AA-CGGATCTCCAATCTTTTTCAGCTGTAATTCATGTTTTAACCGGAGCTCACAAGTATA 397 || || |||| ||||||||||| || || ||||||||||||||||||||||||||||||| Sbjct 216 AAACG-ATCTTCAATCTTTTTCGGCAGTGATTCATGTTTTAACCGGAGCTCACAAGTATA 274 Query 398 CGCTCGCCAGGTGTTTGATAAAAAGCCTCATAGAGCGTCTCAGGCGCTACAGTGAGCCGA 457 |||||||||| ||||||||||||||||||||||| ||||| | ||| |||||||||||| Sbjct 275 CGCTCGCCAGATGTTTGATAAAAAGCCTCATAGAACGTCTGAAACGCCACAGTGAGCCGA 334 Query 458 CTAACATTTCTCATAGACTTTTCAATGCTCTTGAAGATATTCAGAGTCCAAAATTCAGTA 517 |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 335 GTAACATGTCTCATAGACTTTTCAATGCTCTGGAAGATATTCAGAGTCCAAAATTCAGTA 394 Query 518 TCGGAGTGTTTAGTCTATTGATCATGGAGTTTTTGGAGATGGGTTTGTTTGAAGATGCTC 577 |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| Sbjct 395 TCGGAGTGTTTAGTCTATTGATTATGGAGTTTCTGGAGATGGGTTTGTTTGAAGAAGCTC 454 Query 578 TTTGGGTGAGTCGAGAGATGAGATGTTCACCGGATTCGAAAGCTTGTCTTGCCATTTTGA 637 ||||||||||||||||||||| ||||||||||||||| |||||||||||| | ||||||| Sbjct 455 TTTGGGTGAGTCGAGAGATGAAATGTTCACCGGATTCAAAAGCTTGTCTTTCGATTTTGA 514 Query 638 ATGGATTGGTTAGAAGGAGAAGGTTTGATTCTGTCTGGGTTGATTACCAACTTATGATCT 697 |||| ||||||||||||||| |||||||||| || ||||||||||||||||||||||||| Sbjct 515 ATGGCTTGGTTAGAAGGAGACGGTTTGATTCAGTTTGGGTTGATTACCAACTTATGATCT 574 Query 698 CTCGTGGGTTGGTCCCTGATGTCCACATTTACTCAGTTTTGTTTCAATGCTGTTTCAAGC 757 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 575 CTCGTGGGTTGGTCCCTGATGTCCACATTTACTTTGTTTTGTTTCAATGCTGTTTCAAGC 634 Query 758 AAGGT-TTTCCCTCCAAGAAAGAGAAACTTCTTGATGAAATGACGTCGTTAGGGGTCAAG 816 ||||| ||| | |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 635 AAGGTCTTTAC-TCCAAGAAAGAGAAACTTCTTGATGAAATGACGTCGTTAGGGATCAAG 693 Query 817 CCAAATGTTTATATCTATACCATATATATCCGTGATCTGTGTAGGGAAAATAAGATGGAA 876 || |||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| Sbjct 694 CCGAATGTTTATATCTATACCATATATATCCTTGATCTCTGTAGGGATAATAAGATGGAG 753 Query 877 GAAGCGGAGAAAATGTTCGAGTTGATGAAGAAACATGGTGTTGTTCCAAACTTGTATACT 936 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 754 GAAGCGGAGAAAATGTTCGAGTTGATGAAGAAACATGGTGTTCTTCCAAACTTGTATACT 813 Query 937 TACAGTGCAATGATTGATGGTTATTGTAAGACCGGTAACCTGAGACAAGCTTACGGCTTG 996 ||||||||||||||||||||||| || |||||||||||| |||||||||||||||| ||| Sbjct 814 TACAGTGCAATGATTGATGGTTACTGCAAGACCGGTAACGTGAGACAAGCTTACGGATTG 873 Query 997 TATAAGGAGATTCTTGTTGCTGAATTGCTGCCAAATGTTGTTGTTTTCGGCACATTGGTC 1056 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 874 TATAAGGAGATTCTTGTTGCTGAATTGCTGCCAAATGTTGTTGTTTTCGGTACATTGGTC 933 Query 1057 GATGGTTTTTGCAAAGCTCGCGAATTGGTAGCTGCAAGAAGCCTTTTCGTGCATATGGTG 1116 ||||| |||||||||||||||||||||||| |||| || ||||||||||||||||||||| Sbjct 934 GATGGATTTTGCAAAGCTCGCGAATTGGTAACTGCGAGGAGCCTTTTCGTGCATATGGTG 993 Query 1117 AAGTTTGGGGTTGATCCTAATTTATATGTTTATAACTGTTTAATTCATGGACAGTGCAAA 1176 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 994 AAGTTTGGGGTTGATCCTAATTTATATGTTTATAACTGTTTAATTCATGGACATTGCAAA 1053 Query 1177 TCAGGGAACATGTTGGAAGCAATGGGATTACTTTCTGAGATGGAAAGTTTGAATCTTTCG 1236 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1054 TCAGGGAACATGTTGGAAGCAGTGGGATTACTTTCTGAGATGGAAAGTTTGAATCTTTCG 1113 Query 1237 CCTGATGTATTCACTTATACTATACTTATCAACGGGCTATGTACTGAAGAGC-GGCTAGC 1295 ||||||||||||||||| ||||||||||||||||||||||||| |||||| | || |||| Sbjct 1114 CCTGATGTATTCACTTACACTATACTTATCAACGGGCTATGTATTGAAGATCAGG-TAGC 1172 Query 1296 AGAAGCAAATCGATTATTTCAGAGGATGAAGAATGAGAGAATTTTTCCGAGCTCTGTGAC 1355 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1173 AGAAGCAAATCGATTATTTCAGAAGATGAAGAATGAGAGAATTTTTCCGAGCTCTGCGAC 1232 Query 1356 TTACAATTCGCTGATTCATGGGTTTTGTAAAGAGTACAATATAGAGAAAGCTCTGGATTT 1415 |||||| |||||||||||||||| ||||||||| |||||||| ||| ||||||||||||| Sbjct 1233 TTACAACTCGCTGATTCATGGGTATTGTAAAGAATACAATATGGAGCAAGCTCTGGATTT 1292 Query 1416 GTGCTCTGAGATGACATCAAGTGGGGTAGAACTCAACATCATAACCTTTTCTACTTTGAT 1475 |||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 1293 GTGCTCTGAGATGACAGCAAGTGGTGTAGAACCCAACATCATAACCTTTTCTACTTTGAT 1352 Query 1476 CGACGGTTACTGCAAAGTGAGAAACATAAAAGCTGCAATGGGCTTGTACTTCGAGATGAC 1535 ||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1353 CGATGGTTACTGCAATGTGAGAGACATAAAAGCTGCAATGGGCTTGTACTTCGAGATGAC 1412 Query 1536 CATTAAAGGTATAGTTCCTGATGTTGTGACCTACACAACTTTGATTGATGCGCATTTCAA 1595 ||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 1413 CATCAAAGGTATAGTTCCTGATGTTGTGACCTACACAGCTTTGATTGATGCACATTTCAA 1472 Query 1596 GGAGGCCAACATGAAAGAAGCACTCAGACTGTACAGTGACATGCTAGAGGCTGGAATTCA 1655 ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| || Sbjct 1473 GGAGGCCAACATGAAAGAAGCACTCAGGCTGTATAGTGACATGCTAGAGGCAGGAATCCA 1532 Query 1656 CCCCAATGATCACACGTTCGCTTGCCTAGTAGATGGATTCTGGAAAGAAGGGCGACTCTC 1715 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1533 CCCCAATGATCACACGTTCGCTTGCCTAGTAGATGGATTCTGGAAAGAAGGACGACTCTC 1592 Query 1716 TGATGCCATCGATTTTTATCTAGAAAACAATCAAGCTGCAACCGGTAAATCCATTTTCCA 1775 || ||||||||||||||||| ||||||||||||| | | | | Sbjct 1593 TGTTGCCATCGATTTTTATCAAGAAAACAATCAA-C---A---G--A------------- 1630 Query 1776 GAGGAGCTGCTGGAAAT-ATGTGGGGTTTACATGCTTGATTGAAGGGTTATGTCAGAACG 1834 | | ||||| ||||| | ||||||||||||||||||||||||||||||| |||||||||| Sbjct 1631 G-G-AGCTGTTGGAA-TCATGTGGGGTTTACATGCTTGATTGAAGGGTTGTGTCAGAACG 1687 Query 1835 GCTACATTCTTAGAGGTAGCAGATTCTTCTCAGACATGAGATCCGGCGGGGTAACCCCTG 1894 ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 1688 GCTACATTCTTAGAGCTAGCAGATTCTTCTCAGACATGAGATCCTGCGGGATAACCCCTG 1747 Query 1895 ACATATGGAGTTACGTATCGATGTTAAAGGCCCACCTCCGAGAAAAGCGTATTACAGATA 1954 ||||||| |||||||| || |||||||||| |||||||| ||||||||||||||| |||| Sbjct 1748 ACATATGCAGTTACGTTTCAATGTTAAAGGGCCACCTCCAAGAAAAGCGTATTACTGATA 1807 Query 1955 CAATGATGTTGCACTGTGACATGATCAAAACTGGGATATTGCCAAACCTTATGGTGAATC 2014 ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1808 CAATGATGTTGCAGTGTGACATGATCAAAACTGGGATATTGCCAAACCTTTTGGTGAATC 1867 Query 2015 AATTGCTAGCCATGTTTTATCAAGAGAATGGATATCTAAGATCAGCTTGTTTCTTGACCA 2074 |||||||||||| |||||| |||| |||||||||| ||| |||||||||||| ||||||| Sbjct 1868 AATTGCTAGCCAGGTTTTACCAAGCGAATGGATATGTAAAATCAGCTTGTTTTTTGACCA 1927 Query 2075 ATTCAAGTCGTTTG 2088 |||||||||||||| Sbjct 1928 ATTCAAGTCGTTTG 1941 > AT5G61410.1 | Symbols: RPE, EMB2728 | D-ribulose-5-phosphate-3-epimerase | chr5:24683606-24686105 REVERSE LENGTH=1408 Length=1408 Score = 211 bits (114), Expect = 2e-53 Identities = 134/143 (94%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 2099 TCAAAAACAC--ATGTAACAGCATATTTCTTATTACAGAGTTTCATTGCAAAATGTATGG 2156 |||||||||| |||||||| |||||||||||| |||| ||||||||||||||||||||| Sbjct 1374 TCAAAAACACATATGTAACAACATATTTCTTATCACAGTGTTTCATTGCAAAATGTATGG 1315 Query 2157 AATCTGCATATCCTCAATTTACAAGACAATGGTACAGAATAGTATAGAGGAGCCTACTTT 2216 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1314 AATCTGCATATCCTCAATTTACAAGACAATGGTACAGAATAGTATAGAGGAGCCTACTTT 1255 Query 2217 GTAGATATAT-AGATTGATTCTT 2238 | |||||| | || ||||||||| Sbjct 1254 GAAGATAT-TGAGTTTGATTCTT 1233 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 111194207175 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5