BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950909
Length=1564
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61520.1 | Symbols: | Major facilitator superfamily protein... 2375 0.0
> AT5G61520.1 | Symbols: | Major facilitator superfamily protein
| chr5:24739026-24741273 REVERSE LENGTH=1975
Length=1975
Score = 2375 bits (1286), Expect = 0.0
Identities = 1451/1531 (95%), Gaps = 9/1531 (1%)
Strand=Plus/Plus
Query 7 AGAAGAAGCAAGAAAACAAGCCATGGCTAAATCAGAATCTGGCGGGAAGATAACGTATTT 66
|||||||||||||||| |||||||||||||||||| ||||||||||||||| || |||||
Sbjct 107 AGAAGAAGCAAGAAAAGAAGCCATGGCTAAATCAGTATCTGGCGGGAAGATTACTTATTT 166
Query 67 TGTGGTGGCATCATGTGTCATGGCCGCCATGGGAGGTGTCCTATTTGGCTACGACATCGG 126
||||||||| ||||||||||||||||||||||| |||||| | || ||||||||||||||
Sbjct 167 TGTGGTGGCTTCATGTGTCATGGCCGCCATGGGCGGTGTCATCTTCGGCTACGACATCGG 226
Query 127 GGTTTCAGGTGGAGTGATGTCAATGGGGCCATTTCTGAAAAGATTTTTCCCAAAAGTGTA 186
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 227 GGTTTCAGGTGGAGTGATGTCAATGGGGCCATTTCTAAAAAGATTTTTCCCAAAAGTGTA 286
Query 187 TAAGCTCCaagaagaagatagaagaagaaga---aACATTAATAACCATTATTGTCTTTT 243
||||||||||||||||||||||||||||||| || | |||||||| || || |||||
Sbjct 287 TAAGCTCCAAGAAGAAGATAGAAGAAGAAGAGGCAATAGCAATAACCACTACTGCCTTTT 346
Query 244 CAATAGCCAACTTCTTACGTCCTTCACATCTTCTCTATACGTTTCTGGCT-TCATCGCTA 302
|||||||||||||||||| |||||||||||||||||||||||||| || | |||||||||
Sbjct 347 CAATAGCCAACTTCTTACATCCTTCACATCTTCTCTATACGTTTCCGG-TCTCATCGCTA 405
Query 303 CTCTGTTGGCTTCGTCCGTGACTCGTTCTTGGGGTCGCAAGCCCTCTATATTTCTCGGTG 362
||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 406 CTCTGTTAGCTTCGTCCGTGACTCGTTCATGGGGTCGCAAGCCCTCTATATTTCTTGGCG 465
Query 363 GCGTGGCCTTTCTCGTCGGCGCTGCTCTTGGTGGCTCTGCTCAAAACGTTGCTATGCTCA 422
| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 GTGTGTCCTTTCTCGCCGGCGCTGCTCTTGGTGGCTCTGCTCAAAACGTTGCTATGCTCA 525
Query 423 TCATTGCACGTCTCTTGCTCGGCGTAGGAGTTGGATTCGCTAACCAGTCGGTTCCTCTGT 482
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 TTATTGCGCGTCTCTTGCTCGGCGTAGGAGTTGGATTCGCTAACCAGTCGGTTCCTCTGT 585
Query 483 ATCTCTCCGAGATGGCGCCGGCAAAATACAGAGGAGCAATCAGCAATGGTTTCCAGCTCT 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 ATCTCTCCGAGATGGCGCCGGCAAAATACAGAGGAGCAATCAGCAATGGTTTCCAGCTCT 645
Query 543 GTATCGGAATTGGATTTCTATCTGCAAATATAATAAACTACGAAACCCAAAAGATCAAAC 602
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 646 GTATCGGAATTGGATTTCTATCTGCAAATGTAATAAACTACGAAACCCAAAATATCAAAC 705
Query 603 ACGGTTGGAGAATCTCTTTAGCCACAGCCGCAATTCCGGCTTCAATACTCACTTTAGGCT 662
| |||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| |
Sbjct 706 ATGGTTGGAGAATCTCTTTAGCCACAGCTGCAATACCTGCTTCAATCCTCACTTTAGGAT 765
Query 663 CACTATTTCTCCCGGAAACGCCAAACAGTATCATCCAGACAACCGGAGATGTTCACAAGA 722
|||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||
Sbjct 766 CACTGTTTCTCCCGGAAACGCCGAATAGTATCATCCAGACCACCGGAGATGTTCACAAGA 825
Query 723 CCGAGCTTATGCTTCGCCGTGTCCGTGGAACAAACGACGTTCAAGACGAGCTTACTGATC 782
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 826 CCGAGCTTATGCTTCGCCGTGTCCGTGGAACTAACGACGTTCAAGATGAGCTTACTGATC 885
Query 783 TCGTTGAAGCGAGTTCTGGTTCTGATACAGATTCAAACGCGTTTGCGAAACTGCTTCAAA 842
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 886 TCGTTGAAGCGAGTTCTGGTTCTGATACAGATTCAAACGCGTTTTTGAAACTGCTTCAAA 945
Query 843 GAAAATATAGGCCTGAGTTAGTGATGGCTTTGGCGATACCTTTCTTTCAGCAAGTTACTG 902
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 946 GAAAATATAGGCCTGAGTTAGTGATGGCTTTGGTGATACCTTTCTTTCAGCAAGTTACTG 1005
Query 903 GAATCAATGTTGTTGCTTTCTACGCACCGGTTTTGTATAGAACCGTTGGGTTTGGAGAGA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GAATCAATGTTGTTGCTTTCTACGCACCGGTTTTGTATAGAACCGTTGGGTTTGGAGAGA 1065
Query 963 GTGGTTCGTTGATGTCCACGCTCGTGACCGGAATCGTGGGAACCACGTCGACGTTCTTGT 1022
|||||||||||||||| || |||||||| ||||||||||||||| |||||||||| ||||
Sbjct 1066 GTGGTTCGTTGATGTCGACCCTCGTGACTGGAATCGTGGGAACCTCGTCGACGTTGTTGT 1125
Query 1023 CGATGCTTGTTGTAGACAGAATCGGTAGAAAGACTCTGTTTTTGATTGGAGGGTTACAGA 1082
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 CGATGCTTGTCGTTGACAGAATCGGTAGAAAGACTCTGTTTTTGATTGGAGGGTTACAGA 1185
Query 1083 TGCTTGTGTCGCAAGTTACCATCGGTGTGATCATTATGGTTGCTGACGT-CAACGACGGT 1141
|||| ||||||||||||||||| ||||||||| ||||||| ||||| || || |||||||
Sbjct 1186 TGCTCGTGTCGCAAGTTACCATTGGTGTGATCGTTATGGTGGCTGATGTTCA-CGACGGT 1244
Query 1142 GTGATCAAGGAGGGGTATGGTTACGCGGTTGTGGTTTTGGTGTGTGTCTACGTGGCGGGG 1201
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1245 GTGATCAAGGAAGGGTATGGTTACGCGGTTGTGGTTTTGGTGTGTGTCTACGTGGCCGGG 1304
Query 1202 TTTGGTTGGTCGTGGGGTCCATTAGGATGGCTTGTACCGAGTGAGATTTTTCCGTTGGAT 1261
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 TTTGGTTGGTCTTGGGGTCCATTAGGATGGCTTGTACCGAGTGAGATTTTTCCGTTGGA- 1363
Query 1262 G-TAAGATCGGCGGCGCAGAGTGTGACGGTAGCAGTGAGTTTTGTGTTTACTTTTGCGGT 1320
| ||||||||| |||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1364 GATAAGATCGGTGGCGCAGAGTGTAACTGTGGCAGTGAGTTTTGTGTTTACTTTTGCGGT 1423
Query 1321 GGCTCAAAGTGCACCACCGATGTTGTGTAAGTTTCGAGCTGGGATTTTCTTCTTTTATGG 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 GGCTCAAAGTGCACCACCGATGTTGTGTAAGTTTCGAGCTGGGATTTTCTTCTTTTATGG 1483
Query 1381 AGGGTGGTTGGTGGTGATGACTGTGGCAGTGCAGCTGTTTTTGCCGGAGACTAAGAATGT 1440
||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1484 AGGGTGGTTGGTGGTAATGACGGTAGCGGTGCAGCTGTTTTTGCCGGAGACTAAGAATGT 1543
Query 1441 TCCGATCGAGAAGGTGGCTGGACTTTGGGAGAAGCATTGGTTTTGGAGGAGAATGACGAG 1500
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 TCCAATCGAGAAGGTGGTTGGACTTTGGGAGAAGCATTGGTTTTGGAGGAGAATGACGAG 1603
Query 1501 CAAGCGTGATATCCAATAAACCACCATACTT 1531
|||||||||||||||| |||||||||| |||
Sbjct 1604 CAAGCGTGATATCCAAGAAACCACCATTCTT 1634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77208438210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5