BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg950924
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61640.1 | Symbols: PMSR1, ATMSRA1 | peptidemethionine sulfo... 952 0.0
> AT5G61640.1 | Symbols: PMSR1, ATMSRA1 | peptidemethionine sulfoxide
reductase 1 | chr5:24775035-24776390 FORWARD LENGTH=924
Length=924
Score = 952 bits (515), Expect = 0.0
Identities = 604/647 (93%), Gaps = 5/647 (1%)
Strand=Plus/Plus
Query 3 TCTCTACAAAATTTCTCCATGAACATACTTAACAAGCTCGGTATCGGATCCAGCAGACAA 62
|||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||
Sbjct 55 TCTCTACAAAATTTCTCCATGAACATACTTAACAAGCTAGGTATAGGATCAAGTAGACAA 114
Query 63 ACCAACATGAATCTTTCTCCAACCGCTCAAGGT-CCCGACGAAGATGCTCCGGCGCCGGG 121
||||||||| ||| |||||||| ||| ||| || |||||| || ||||||||||||||
Sbjct 115 ACCAACATGGATCCTTCTCCAATCGCACAA-GTAATCGACGACGAAGCTCCGGCGCCGGG 173
Query 122 AAACCAGTTTGCTCAATTCGGCGCCGGTTGTTTCTGGAGCGTGGAATTAGCGTACCAGAG 181
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 AAACCAGTTTACTCAATTCGGCGCCGGTTGTTTCTGGAGCGTGGAATTAGCGTACCAGAG 233
Query 182 AGTTCCAGGAGTGACTCAAACCGAGGTTGGTTATTCTCAAGGGATCACCCACAATCCTTC 241
||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||
Sbjct 234 AGTTCCAGGAGTGACTCAAACAGAGGTTGGTTATTCTCAAGGGATCACTCACGATCCTTC 293
Query 242 TTACGGAGATGTTTGTTCAGGCACCACGAATCATGCCGAGATTGTTCGTGTTCAATATGA 301
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 294 TTACAAAGATGTTTGTTCAGGTACCACGAATCATGCCGAGATTGTTCGTGTTCAATATGA 353
Query 302 TCCCAAAGAGTGTAGTTACGAGTCGCTTCTTGATTTGTTCTGGTCTAAGCATGATCCTAC 361
||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||
Sbjct 354 TCCAAAAGAGTGTAGTTACCAGTCGCTGCTTGATTTGTTCTGGTCTAAGCATGATCCCAC 413
Query 362 CACTTTGAATCGCCAGGGAAACGATGTGGGAACCCAATACCGATCAGGGATATATTTCTA 421
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 414 CACTTTGAATCGGCAGGGAAATGATGTGGGAACCCAATACCGTTCAGGGATATATTTCTA 473
Query 422 CAACCCGGAGCAAGAGAAATTAGCACGTGAGTCACTGGAGCGTCACCAGCAACAAGTTGA 481
||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||
Sbjct 474 CAACCCGGAGCAAGAGAAACTAGCACGCGAGTCACTGGAGCGGCACCAGCAACAAGTTGA 533
Query 482 CAGGAAGATTGTGACAGAGATCTTACCGGCTAAGAAATTTTGCAGAGCCGAGGAACATCA 541
||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 534 CAGGAAGGTTGTGACAGAGATCTTACCGGCTAAGAAATTTTATAGAGCTGAGGAACATCA 593
Query 542 CCAGCAATACTTGTCTAAAGGAGG-ACGGTTTGGTCTCAAGCAATCCACGGCAAAAGGCT 600
|||||||||||||||||||||||| | |||||||||| |||||||| |||| ||||||||
Sbjct 594 CCAGCAATACTTGTCTAAAGGAGGGA-GGTTTGGTCTTAAGCAATCAACGGAAAAAGGCT 652
Query 601 GCAATGACCCAATCCGCTGCTACGGGTAAAAAGCCTTGGTTCTAACC 647
|||| |||||||||||||||||||||||||| |||||| ||||||||
Sbjct 653 GCAACGACCCAATCCGCTGCTACGGGTAAAA-GCCTTGCTTCTAACC 698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31346107728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5