BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg950977 Length=1074 Score E Sequences producing significant alignments: (Bits) Value AT5G62130.2 | Symbols: | Per1-like family protein | chr5:24950... 1563 0.0 > AT5G62130.2 | Symbols: | Per1-like family protein | chr5:24950264-24953232 REVERSE LENGTH=2039 Length=2039 Score = 1563 bits (846), Expect = 0.0 Identities = 922/959 (96%), Gaps = 4/959 (0%) Strand=Plus/Plus Query 120 GTCATGTGTTGATCAATGTCAGAAAACTGGATGCGTGGGGGATACTTGCTTCCAACACTG 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 685 GTCATGTGTTGATCAATGTCAGAAAACTGGATGCGTGGGGGATACTTGCTTCCAACACTG 744 Query 180 TAAATTTTCAGCTGATGGAAAAGCCATTGACGGTCCGTGGTACATGCAAGAGCCACTTTA 239 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 745 TAAATTTTCAGCTGATGGAAAAGCCATTGACGGTCCATGGTACATGCAAGAGCCACTTTA 804 Query 240 CCTAAGATGGAAACAATGGGATTGCCAAAGTGACTGTGAGTACGAATGCATGATGACaag 299 ||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 805 CCTGAGATGGAAACAATGGGATTGCCAAAGTGATTGTCAGTACGAATGCATGATGACAAG 864 Query 300 agaagaagaaagaaaaaggaacggagaaagaCCTACCAAGTATTTCGGTAAATGGCCACT 359 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 865 AGAAGAAGAAAGAAAAAGAAACGGAGAGAGACCTACCAAGTATTTCGGTAAATGGCCACT 924 Query 360 CAAACATGTCTACGGAATTCAGGAACCTGTGTCTGTTGCTTTCTCTGCTCTCGACCTTGC 419 |||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| Sbjct 925 CAAACATGTCTACGGAATTCAGGAACCTGTCTCTGTTGCTTTCTCTGCTCTGGATCTTGC 984 Query 420 GATGCAATTCCAAGGATGGGTCTCATATTTCATCCTCGTTTACTATAAATTGCCTCTCCA 479 ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 985 AATGCAGTTTCAAGGATGGGTCTCATATTTCATCCTCGTTTACTATAAATTGCCTCTCCA 1044 Query 480 GCCAAATCGGAAAACGTACTACGAGTACAACGGATTAGTGCATATCTATGCCATCATCGT 539 |||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| || Sbjct 1045 GCCAAATCGGAAAACGTACTACGAGTACAATGGAATAGTGCATATCTACGCCATCATTGT 1104 Query 540 AATGAATTCACTCTTCTGGAGTAGTATTTGTCATACCAGAGATGTTGAATTGACGGTGAG 599 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1105 AATGAATTCACTCTTCTGGAGTAGTATTTGTCATAGCAGAGATGTTGAATTGACGGAGAG 1164 Query 600 GCTAGATTACTCTTCAGCTACTGTATTAGCCGGATTTTCGCTTATTCTAGCAATACTTCG 659 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1165 GCTAGATTACTCTTCAGCTACTGTATTAGCCGGATTTTCGCTTATTCTAGCAATACTCCG 1224 Query 660 GTCTTTCAGTATTCAAGATCAATCTGTCAAAATCATGGTTACTGCACCTATTCTTGCGGT 719 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1225 GTCCTTCAGTATTCAAGATCAATCTGTCAAAATCATGGTTACTGCACCTATTCTTGCGGT 1284 Query 720 TGTTGCAACTCATATTCTCTACCTAAATTTCTACAACCTCGATGAAGGGCTTCACTGGAA 779 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1285 TGTTGCAACTCATATTCTCTACCTTAATTTCTACAACCTCGATGAAGGGCTTCACTGGAA 1344 Query 780 AGTTATGTTCGGGATTGGAGGAATAGAGCTAGTAGTGTGGGGATTATGGGCGGCTTTAAC 839 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1345 AGTTATATTCGGGATTGGAGGAATAGAGCTAGTAGTATGGGGATTATGGGCGGCTTTAAC 1404 Query 840 GTCTCATCCATCGAAGTGGAAGCTAAGAGCTTTCTTCATCTCGGGCATACTCACATTATG 899 ||| |||||||| ||||||||||||||||||||||| |||||| ||||||||||||| || Sbjct 1405 GTCACATCCATCAAAGTGGAAGCTAAGAGCTTTCTTGATCTCGAGCATACTCACATTGTG 1464 Query 900 TCTTAGAATGCTCGATTTCCCTCCATACAAAGGCTACGTCGATGCTCATGCTCTTTGGCG 959 |||||||||| |||| |||||||| |||||||||||| |||||||||||||||||||||| Sbjct 1465 TCTTAGAATGTTCGACTTCCCTCCGTACAAAGGCTACATCGATGCTCATGCTCTTTGGCG 1524 Query 960 CGGCGCAGGGATTCCTCTTTCTTACCTTTGGTGGAGTTTCGTCTGCGATGACGCAGTTTT 1019 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1525 CGGTGCAGGGATTCCTCTTTCTTACCTTTGGTGGAGTTTCGTCTGCGATGACGCAGTTTT 1584 Query 1020 CAGAACCACCGTTAATCTCAAGAAATCCAAGTGAT---GAA-AAATGATACAAAAGTCT 1074 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 1585 CAGAACCACCGTTAATCTCAAGAAATCCAAGTGATCATGAACAAATGATACAAAAGTCT 1643 Score = 169 bits (91), Expect = 6e-41 Identities = 105/112 (94%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 7 GTTTTTGGTAATCGGATGGCGCGAAATCCGCCATGGGTTCTGCTTATTGTTGTGGTCTGG 66 |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | | Sbjct 300 GTTTTTGGTAATCGGATGGCGCGAAATCTGCCATGGGTTCTGCTTATTATTGTGGTATCG 359 Query 67 TGTCTTGTTTCAACGCTTGAAGCTAGTGATGGAGATTCTGATCCTCTTTACA 118 |||||||||||||| |||||||||||||| |||||||||||| ||||||||| Sbjct 360 TGTCTTGTTTCAACACTTGAAGCTAGTGAAGGAGATTCTGATTCTCTTTACA 411 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52610171160 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5