BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg951014 Length=674 Score E Sequences producing significant alignments: (Bits) Value AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structura... 243 2e-63 > AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural maintenance of chromosomes 2 | chr5:25056262-25062625 FORWARD LENGTH=3763 Length=3763 Score = 243 bits (131), Expect = 2e-63 Identities = 152/162 (94%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 47 CCTTACAGAAGATTCATGATGAATCTCTTGCCGAGCTCAAGTTGATACATGCAAGGATGA 106 |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| Sbjct 2628 CCTTACAGAAGATTCATGATGAGTCTCTTGCCGAGCTCAAGTTGATACATGCAAAGATGA 2687 Query 107 GGGAATGCGATACACATG-TAAGTGGTTTTGTCACTGAGCAGGAAAAATGTCTGCAGAAG 165 |||||| |||||||| | ||||||||||||||||||| |||||||| |||||||||||| Sbjct 2688 AGGAATGTGATACACA-GATAAGTGGTTTTGTCACTGACCAGGAAAAGTGTCTGCAGAAG 2746 Query 166 CTTAGTTACATGAAGCTTGAAAGAAAGAAATTGGAAAATGAG 207 |||||| ||||||||||||| ||||||||||||||||||||| Sbjct 2747 CTTAGTGACATGAAGCTTGAGAGAAAGAAATTGGAAAATGAG 2788 Score = 172 bits (93), Expect = 3e-42 Identities = 100/103 (97%), Gaps = 1/103 (1%) Strand=Plus/Plus Query 291 CTTGGAAAAAAGAGTGAACAAGAAGGTTATGGCTATGTTTGAGAAAGCAGAAGATGAATA 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2974 CTTGGAAAAAAGAGTGAACAAGAAGGTTATGGCTATGTTTGAGAAAGCAGAAGATGAATA 3033 Query 351 CAATGCTCTGATATCGAAGAAAAATACTATCGAGAAAGA-AAA 392 |||||||||||||||||| ||||||||||||||||| || ||| Sbjct 3034 CAATGCTCTGATATCGAAAAAAAATACTATCGAGAATGACAAA 3076 Score = 108 bits (58), Expect = 9e-23 Identities = 84/95 (88%), Gaps = 8/95 (8%) Strand=Plus/Plus Query 384 GAAAGAAA-AGTTAACAAGAAAGGTTATTGCTATGTTTGAGAAAGCAGAAGATGAATACA 442 |||| ||| ||| |||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 2978 GAAA-AAAGAGTGAACAAG-AAGGTTATGGCTATGTTTGAGAAAGCAGAAGATGAATACA 3035 Query 443 ATGCTCTGGTATC-AAAGAAAAATTACCTA-CGAG 475 |||||||| |||| ||| |||||| || || |||| Sbjct 3036 ATGCTCTGATATCGAAA-AAAAAT-AC-TATCGAG 3067 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32601961403 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5