BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg951020 Length=901 Score E Sequences producing significant alignments: (Bits) Value AT5G62430.1 | Symbols: CDF1 | cycling DOF factor 1 | chr5:25069... 1314 0.0 AT1G26790.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 145 9e-34 > AT5G62430.1 | Symbols: CDF1 | cycling DOF factor 1 | chr5:25069093-25070934 REVERSE LENGTH=1249 Length=1249 Score = 1314 bits (711), Expect = 0.0 Identities = 843/903 (93%), Gaps = 23/903 (3%) Strand=Plus/Plus Query 9 AAGCTCTTTGGTATGAAAATTCCTTTCCCGACGGTTTTAGAGGTTACTACTGATgaagaa 68 ||||||||||||||||||||||||||||||||||||||||||| | | ||||| ||| Sbjct 175 AAGCTCTTTGGTATGAAAATTCCTTTCCCGACGGTTTTAGAGG-T--TGCTGAT---GAA 228 Query 69 gaagaagaaaagaaCCAAAACGAGACGTTAACTGATCAATCGGAGAAAGACAAAACCCTT 128 ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 229 GAAGAAGAAAAGAACCAAAACAAGACATTAACTGATCAATCGGAGAAAGACAAAACCCTA 288 Query 129 AAGAAACCAACCAAGATTCTTCCATGTCCAAGATGCAACAGCATGGAGACAAAATTCTGT 188 |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 289 AAGAAACCAACCAAGATTCTTCCATGTCCAAGATGCAACAGCATGGAGACTAAGTTCTGT 348 Query 189 TACTACAACAACTACAACGTAAACCAACCTCGCCATTTTTGTAAAGCCTGTCAGAGATAT 248 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 349 TACTACAACAACTACAACGTAAACCAACCTCGCCATTTTTGTAAAGCTTGTCAGAGATAT 408 Query 249 TGGACCTCTGGTGGGACCATGAGAAGTGTTCCCATCGGAGCAGGACGACGCAAGAACAAG 308 |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 409 TGGACCTCAGGTGGGACCATGAGAAGTGTTCCAATCGGAGCAGGACGGCGCAAGAACAAG 468 Query 309 AACAACTCATCGTCATCAACTTCACATTACCACCACGTGACTATCTCCGAAACAAATGGT 368 ||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| Sbjct 469 AACAACTCA----C--CAACTTCACATTACCACCATGTGACTATCTCCGAAACAAATGGT 522 Query 369 CCGGTCCTTAGTTTCAGCCTCGGAGATGATCAAAAGGTCTCGAGTAATAGGTTCGGGAAT 428 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 523 CCGGTCCTTAGTTTCAGCCTCGGAGATGATCAAAAGGTCTCGAGTAATAGGTTTGGTAAT 582 Query 429 CCAAAGCTAGTGGCTAGGATAGAGAACAATGACGAGCGCTCAAATAACAACACTTCGAAC 488 | ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 583 CAAAAGCTAGTTGCTAGGATAGAGAACAATGACGAGCGCTCTAATAACAACACTTCGAAC 642 Query 489 --T--GC-TT-T---CCAGGAGTTTCGTGGCCGTACACGTGGAATCCTGCGTTTTACCCG 539 | | || | || |||||||||||||||||||||||||||||||||||||||||| Sbjct 643 GGTTTGAATTGTTTTCCGGGAGTTTCGTGGCCGTACACGTGGAATCCTGCGTTTTACCCG 702 Query 540 GTTTACCCTTACTGGAACATTCCAATGTTGTCTTCTCCGGTTAA-TTCAAGTCCTACTTC 598 ||||||||||| |||| ||| ||| |||||||||||||||| || ||||||||||||||| Sbjct 703 GTTTACCCTTATTGGAGCATGCCAGTGTTGTCTTCTCCGGT-AAGTTCAAGTCCTACTTC 761 Query 599 TACTCTTGGTAAGCATTCGAGGGACGAAGACGAAACGGTGAAGCAAAAACAGAGGAACGT 658 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | Sbjct 762 TACTCTTGGTAAGCATTCGAGAGACGAAGACGAGACGGTGAAGCAAAAACAGAGGAATGG 821 Query 659 ATCTGTATTGGTTCCTAAGACTTTAAGAATTGATGATCCTAATGAAGCTGCAAAGAGTTC 718 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 822 ATCTGTATTGGTTCCAAAGACTTTGAGAATTGATGATCCTAATGAAGCTGCAAAGAGTTC 881 Query 719 TATATGGACAACACTTGGTATCAAGAACGAAGTTATGTTCAATGGGTTTGCTTCGAAGAA 778 ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 882 GATATGGACAACACTTGGGATCAAGAACGAAGTTATGTTCAATGGGTTTGGTTCGAAGAA 941 Query 779 AGAGGTTAAGATTAATAACAAAGAAGAAACAGAGACTTCTCTTGTTCTTTGTGCAAACCC 838 |||||||||| | | ||||||||||||||||||||| || |||||||||||||||||||| Sbjct 942 AGAGGTTAAGCTCAGTAACAAAGAAGAAACAGAGACCTCACTTGTTCTTTGTGCAAACCC 1001 Query 839 TGCTGCGTTATCAAGATCAATCAATTTTCATGAGCAGATGTGATTGTATACATATGATAT 898 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1002 TGCTGCGTTATCAAGATCAATCAATTTCCATGAGCAGATGTGATTGTATACATATGATAT 1061 Query 899 ATA 901 ||| Sbjct 1062 ATA 1064 > AT1G26790.1 | Symbols: | Dof-type zinc finger DNA-binding family protein | chr1:9273857-9275312 REVERSE LENGTH=1191 Length=1191 Score = 145 bits (78), Expect = 9e-34 Identities = 153/187 (82%), Gaps = 14/187 (7%) Strand=Plus/Plus Query 129 AAGAAACCA-ACCAAGATTCTTCCATGTCCAAGATGCAACAGCATGGAGACA--AAATTC 185 ||||||||| | |||||||||||||||||| |||||||||||| | ||||| |||||| Sbjct 385 AAGAAACCAGA-CAAGATTCTTCCATGTCCGAGATGCAACAGC--GCAGACACCAAATTC 441 Query 186 TGTTACTACAACAACTACAACGTAAACCAACCTCGCCATTTTTGTA-AAGCCTGTCAGAG 244 ||||||||||||||||||||||| ||||| || || || || |||| || || ||||| Sbjct 442 TGTTACTACAACAACTACAACGTTAACCAGCCACGTCACTTCTGTAGAAAA-TGCCAGAG 500 Query 245 ATATTGGACCTCTGGTGGGA-CCATGAGAAGT-GTTCCCA-TCGGAGCAGGACGACGCAA 301 ||||||||| ||||||| | ||||||| | | || ||| | || |||| || ||||| Sbjct 501 GTATTGGACCGCTGGTGG-ATCCATGAGGA-TCGT-CCCGGTTGGCTCAGGCCGTCGCAA 557 Query 302 GAACAAG 308 ||||||| Sbjct 558 GAACAAG 564 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44005112772 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5