BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951151

Length=253
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G63500.1 | Symbols:  | Protein of unknown function (DUF 3339...   411    2e-114


> AT5G63500.1 | Symbols:  | Protein of unknown function (DUF 3339) 
| chr5:25423407-25423791 FORWARD LENGTH=385
Length=385

 Score =  411 bits (222),  Expect = 2e-114
 Identities = 243/253 (96%), Gaps = 1/253 (0%)
 Strand=Plus/Plus

Query  1    TCTCTCTGTAAGACAAGAAGTTATGGCGGATTGGGGCCCAGTGTTGATCGCCGTGATCCT  60
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  32   TCTCTCTTTAAGACAAGAAGTTATGGCGGATTGGGGCCCAGTGTTGATCGCCGTGATCCT  91

Query  61   CTTCGTAGTTCTATCGCCGGGACTTCTTTTCCAGATTCCGGCGGGAGGTCGAGTTGTCGA  120
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  92   CTTCGTAGTTCTATCGCCGGGGCTTCTTTTCCAGATTCCGGCGGGAGGTCGAGTTGTCGA  151

Query  121  ATTCGGTAATATGCAGACGAGTGGCGCGTCGATTCTCGTTCACGCAATCATCTTCTTTGG  180
            ||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct  152  ATTCGGTAATATGCAGACGAGTGGCGCTTCGATTCTCGTTCACGCCATCATTTTCTTTGG  211

Query  181  TCTCATCACTATCTTCACCATCGCCATTAACGTCCACATCTATTCCGGTTAACTATTGTA  240
            ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||
Sbjct  212  TCTCATCACTATCTTTACCATCGCCATAAACGTCCACATCTATTCCGGTTAACTGTT-TA  270

Query  241  GCCAGAGAAACCG  253
            |||||| ||||||
Sbjct  271  GCCAGACAAACCG  283



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11511314521


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5