BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951277
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64460.2 | Symbols: | Phosphoglycerate mutase family protei... 1487 0.0
> AT5G64460.2 | Symbols: | Phosphoglycerate mutase family protein
| chr5:25772849-25775568 REVERSE LENGTH=1106
Length=1106
Score = 1487 bits (805), Expect = 0.0
Identities = 857/882 (97%), Gaps = 3/882 (0%)
Strand=Plus/Plus
Query 11 GTTTGCAGAAATGGAGACTGGTGCTGGTATAGGTTTGTACCCTTTGCACCGCTGCAAAAC 70
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 88 GTTTGCAGAAATGGAGACTGGTGCTGGTATAGGTTTGTACCCTTTGCATCGCTGCAAAAC 147
Query 71 CATTTACCTTGTGAGACATGCTCAGGGGATTCACAATGTTGATGGGGAAAAGAACTATAA 130
||||||||| ||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 148 CATTTACCTAGTGAGACATGCTCAGGGGATTCACAATGTGGATGGGGAGAAGAATTATAA 207
Query 131 GGCTTACATGTCTCATGACTACTTTGATGCTGAGTTGACCCAGCTTGGCTGGAAACAGGT 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 GGCTTACATGTCTCATGACTACTTTGATGCTGAGTTGACCCAGCTTGGCTGGAAACAGGT 267
Query 191 AGATAGTTTGCGTAAGCATGTTCATTCCACTGGACTTCACAAGAAGATCGAACTGGTCAT 250
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 268 AGATAGTTTGCGTAAGCATGTTCATTCCAGTGGACTTCACAAGAAGATCGAACTGGTCAT 327
Query 251 TTCGTCTCCATTGATGAGAACATTGCAAACTGCTGTTGGTGTTTTTGGTGGAGAGGGCTA 310
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 328 TTCGTCTCCACTGATGAGAACCTTGCAAACTGCTGTTGGTGTTTTTGGTGGAGAGGGCTA 387
Query 311 CACAGATATGAGTGATGTACTACCTCTAATGGTAGCAAATGCAGGAAATAGCAGCCGTGC 370
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 CACGGATATGAGTGATGTACTACCTCTAATGGTAGCAAATGCAGGAAATAGCAGCCGTGC 447
Query 371 AGCTATATCGAGTTTAAACTGCCCACCAATTATTACAGAGGAGTCCTGCAGAGAACATTT 430
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 448 AGCTATATCGAGTTTAAACTGCCCACCAGTTATTACAGAGGAGTCCTGCAGAGAGCATTT 507
Query 431 GGGAGTGCATCCATGTGATCAGAGGAGAAGTATCAGCGACTATCAGTTTCTTTTCCCTGC 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 GGGAGTGCATCCATGTGATCAGAGGAGAAGTATCAGCGACTATCAGTTTCTTTTCCCTGC 567
Query 491 AGTTGACTTTTCACTGATAGAAAGCGAGGAAGACAAGTTATGGAAGGCTGATGTTAGAGA 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 AGTTGACTTTTCACTGATAGAAAGCGAGGAAGACAAGTTATGGAAGGCTGATGTTAGAGA 627
Query 551 AACAATTGAAGAACTTGCAGCTAGAGGAAAAAAGTTCCTGAACTGGCTATGGACACGGAA 610
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 AACGATTGAAGAACTTGCAGCTAGAGGAAAAAAGTTCCTGAACTGGCTATGGACACGGAA 687
Query 611 AGAAAAAGAGATAGCGATTGTGACACACAGTGGTTTCTTGTTTCACACATTGAATGCACT 670
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 AGAAAAAGAGATAGCTATTGTGACACACAGTGGTTTCTTGTTTCACACATTGAATGCACT 747
Query 671 ACAAAACGAGTGTCATCCAGATGTTAAGAAGGAAATTTGCAACCACTTTGCGAACTGTGA 730
|||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 748 ACAAAACGAGTGTCATCCAGATGTTAAGAAGGAAATTTGCGGCCACTTTGCTAATTGTGA 807
Query 731 GCTACGTTCAATGGTCATCGTCGATAGAAGTATGTTGGGATCAGACACTTCGGTGACTGA 790
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 808 GCTACGTTCAATGGTCATCGTCGATAGAAGTATGTTGGGATCGGACAGTTCGGTGACTGA 867
Query 791 TTATCCAGGAAAGATTCCAAAGGGGAGTGACCTTCCAAGTGATGCTGTTGTAGATGATAA 850
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 868 TTATCCAGGAAAGATTCCAAAGGGGATTGATCTTCCAAGTGATGCTGTTGTAGATGATAA 927
Query 851 CAACATCAAAGTTGAGTGATTCTTTATG--G-ACACGGCATT 889
|||||||||||||||||||||||||||| | |||| |||||
Sbjct 928 CAACATCAAAGTTGAGTGATTCTTTATGATGGACACTGCATT 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43402303008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5