BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg951288

Length=293
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64552.1 | Symbols: CPuORF22 | conserved peptide upstream op...   171    4e-42
  AT5G64550.1 | Symbols:  | loricrin-related | chr5:25801528-2580...   171    4e-42


> AT5G64552.1 | Symbols: CPuORF22 | conserved peptide upstream 
open reading frame 22 | chr5:25801528-25804980 REVERSE LENGTH=2533
Length=2533

 Score =  171 bits (92),  Expect = 4e-42
 Identities = 102/106 (96%), Gaps = 3/106 (3%)
 Strand=Plus/Plus

Query  191  TCTTGAAGATGGACAGGGCAGATACATGGGGATTTGTCAGTGGTGGGAGATGTTTATATC  250
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  199  TCTTGAAGATGGACAGGGCAGATACATGGGGATTTGTCAGCGGTGGGAGATGTTTATATC  258

Query  251  TCAAGTTGCTTTTATGTTTATAGCTCTACAAGGTG-T-T-CTAAGT  293
            ||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct  259  TCAAGTTGCTTTTATGTTTATAGCTCTACAAGGTGGTGTTCTAAGT  304


> AT5G64550.1 | Symbols:  | loricrin-related | chr5:25801528-25804980 
REVERSE LENGTH=2533
Length=2533

 Score =  171 bits (92),  Expect = 4e-42
 Identities = 102/106 (96%), Gaps = 3/106 (3%)
 Strand=Plus/Plus

Query  191  TCTTGAAGATGGACAGGGCAGATACATGGGGATTTGTCAGTGGTGGGAGATGTTTATATC  250
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  199  TCTTGAAGATGGACAGGGCAGATACATGGGGATTTGTCAGCGGTGGGAGATGTTTATATC  258

Query  251  TCAAGTTGCTTTTATGTTTATAGCTCTACAAGGTG-T-T-CTAAGT  293
            ||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct  259  TCAAGTTGCTTTTATGTTTATAGCTCTACAAGGTGGTGTTCTAAGT  304



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13522024481


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5