BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg951429 Length=1406 Score E Sequences producing significant alignments: (Bits) Value AT5G65720.1 | Symbols: ATNIFS1, NIFS1, NFS1, ATNFS1 | nitrogen ... 2239 0.0 > AT5G65720.1 | Symbols: ATNIFS1, NIFS1, NFS1, ATNFS1 | nitrogen fixation S (NIFS)-like 1 | chr5:26296253-26298072 FORWARD LENGTH=1820 Length=1820 Score = 2239 bits (1212), Expect = 0.0 Identities = 1344/1408 (95%), Gaps = 7/1408 (0%) Strand=Plus/Plus Query 1 AAATCCGAGGTTTT-GAATCTATGGCGTCTAAGGTAATCTCTGCCACAATCCGCCGAACC 59 ||| |||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||| Sbjct 78 AAA-CCGAGGTTTTAGAAAC-ATGGCGTCTAAGGTAATCTCTGCCACAATCCGCAGAACC 135 Query 60 CTAACCAATCCACACGGCGCTTTTTCCCGGTGTCGTC-ACCTATCGACCGCCGCTGCTGC 118 |||||||| ||||||||| |||||||||||||||| | || |||| |||||||||||||| Sbjct 136 CTAACCAAACCACACGGCACTTTTTCCCGGTGTCG-CTACTTATCAACCGCCGCTGCTGC 194 Query 119 GACGGCGGTGAATTACGAGGATGAATCGATTTTGATGAAAGGAGTTCGAATTTCAGGTAG 178 ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 195 GACGGAGGTGAATTACGAGGATGAATCGATTATGATGAAAGGAGTTCGAATTTCAGGTAG 254 Query 179 ACCTCTTTATTTAGATATGCAAGCGACGACTCCGATTGATCCTAGGGTATTCGATGCGAT 238 ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 255 ACCTCTTTACTTAGATATGCAAGCGACGACTCCGATTGATCCTAGAGTATTCGATGCGAT 314 Query 239 GAATGATTCCAC-GATCCATGAGTACGGTAATCCTCACTCGCGAACTCATATGTACGGCT 297 ||||| || ||| |||||||||||| || ||||||||||||||||| ||| | ||||||| Sbjct 315 GAATGCTT-CACAGATCCATGAGTATGGGAATCCTCACTCGCGAACGCATCTCTACGGCT 373 Query 298 GGGAAGCTGAGAACGCCGTCGAGGTTGCTCGAATCCAGGTCGCGAAACTGATCGAAGCTT 357 ||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| Sbjct 374 GGGAAGCTGAGAACGCCGTCGAGAACGCACGAAACCAGGTCGCGAAACTGATCGAAGCTT 433 Query 358 CTCCGAAGGAGATCATATTCATGTCCGGTGCGACGGAGGCGAACAATACGGCGGTGAAAG 417 | |||||||||||| ||||| |||||||||| |||||||||||||||| ||||||||||| Sbjct 434 CACCGAAGGAGATCGTATTCGTGTCCGGTGCAACGGAGGCGAACAATATGGCGGTGAAAG 493 Query 418 GAGTGATGCACTTTTACAGGGACACGAAGAAACACGTTATCACTACACAGACTGAGCACA 477 |||||||||||||||||| ||||||||||||||| || || ||||||||||||||||| | Sbjct 494 GAGTGATGCACTTTTACAAGGACACGAAGAAACATGTGATAACTACACAGACTGAGCATA 553 Query 478 AGTGTGTGCTTGATTCGTGTAGGCATTTGCAGCAAGAAGGATTTGAGGTAACTTACTTGC 537 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 554 AGTGTGTGCTTGATTCGTGTAGGCATTTGCAGCAAGAAGGATTTGAGGTAACTTATTTAC 613 Query 538 CTGTGAAAACTGATGGATTGGTTGATTTAGAGATGTTGAAAGAAGCTATTAGACCAGATA 597 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | Sbjct 614 CTGTGAAAACTGATGGATTGGTTGATTTAGAGATGTTGAGAGAAGCTATTAGGCCAGACA 673 Query 598 CAGGGCTAGTTTCGATTATGGCTGTGAACAATGAGATTGGTGTGGTTCAGCCTATGGAGG 657 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 674 CAGGGCTAGTTTCTATTATGGCTGTGAACAATGAGATTGGTGTGGTTCAACCTATGGAGG 733 Query 658 AGATTGGTAGGATTTGCAAAGAGCATAATGTTCCGTTTCATACTGATGCTGCTCAAGCTA 717 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 734 AGATTGGTATGATTTGCAAAGAGCATAATGTTCCGTTTCATACTGATGCTGCTCAAGCTA 793 Query 718 TTGGGAAGATACCTGTTGATGTTAAGAAGTGGAATGTTGCTTTGATGTCAATGAGTGCTC 777 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 794 TTGGGAAGATACCTGTTGATGTTAAGAAGTGGAATGTTGCTTTGATGTCTATGAGTGCTC 853 Query 778 ACAAGATCTATGGACCAAAAGGTGTTGGTGCTTTGTATGTGAGGAGGAGGCCGAGAATCA 837 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 854 ACAAGATCTATGGACCGAAAGGTGTTGGTGCTTTGTATGTGAGGAGGAGGCCGAGAATCA 913 Query 838 GGCTTGAGCCGTTGATGAATGGTGGAGGTCAGGAGAGGGGGTTGCGTAGTGGCACGGGGG 897 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 914 GGCTTGAGCCGTTGATGAATGGTGGAGGTCAGGAGAGGGGATTGCGTAGTGGTACGGGGG 973 Query 898 CTACGCAGCAGATTGTTGGGTTTGGGGCTGCTTGTGAATTGGCGATGAAGGAGATGGAGT 957 |||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| Sbjct 974 CTACGCAGCAGATTGTTGGGTTCGGGGCTGCTTGTGAGTTGGCTATGAAGGAGATGGAGT 1033 Query 958 ATGATGAGAAGTGGATTAAGGGACTGCAGGAGAGGTTGCTGAATGGGATTAGAGAGAAGC 1017 |||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||| Sbjct 1034 ATGATGAGAAGTGGATTAAGGGGTTACAGGAGAGGTTGCTGAATGGGGTTAGAGAGAAGC 1093 Query 1018 TTGATGGTGTTGTGGTGAATGGTTCAATGGATAGTCGATATGTAGGGAATCTGAATTTGT 1077 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1094 TTGATGGTGTTGTGGTGAATGGTTCAATGGATAGTCGATATGTAGGGAATTTGAATTTGT 1153 Query 1078 CGTTTGCTTATGTTGAAGGAGAGAGTCTGTTGATGGGGTTGAAGGAAGTTGCAGTGTCTA 1137 |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 1154 CGTTTGCTTATGTTGAAGGAGAGAGTTTGTTGATGGGATTGAAGGAAGTTGCAGTGTCTA 1213 Query 1138 GTGGAAGTGCTTGTACTAGTGCGAGTTTGGAGCCTTCTTATGTGTTGAGAGCTTTGGGTG 1197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1214 GTGGAAGTGCTTGTACTAGTGCGAGTTTGGAGCCTTCTTATGTGTTGAGAGCTTTGGGTG 1273 Query 1198 TGGATGAGGACATGGCTCACACTTCGATTAGGTTTGGGATTGGTAGGTTTACCACAAAGG 1257 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1274 TGGATGAAGACATGGCTCACACTTCGATTAGGTTTGGGATTGGTAGGTTTACCACGAAGG 1333 Query 1258 AAGAGATCGATAAAGCGGTCGAGCTTACGGTTAAACAAGTTGAGAAGTTGAGGGAAATGA 1317 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1334 AAGAGATTGATAAAGCGGTCGAGCTTACGGTTAAACAAGTTGAGAAGTTGAGGGAAATGA 1393 Query 1318 GCCCGCTTTATGAAATGGTTAAAGAAGGTATCGATATCAAGAACATACAATGGTCTCAAC 1377 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1394 GCCCGCTTTATGAAATGGTTAAAGAAGGTATCGATATCAAGAACATTCAATGGTCTCAAC 1453 Query 1378 ACTGATTCAACAGTTCCACTCAAACTGT 1405 |||||||||||||||||||||||||||| Sbjct 1454 ACTGATTCAACAGTTCCACTCAAACTGT 1481 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69276752100 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5