BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg951584 Length=1121 Score E Sequences producing significant alignments: (Bits) Value AT5G66570.1 | Symbols: PSBO-1, OEE1, OEE33, OE33, PSBO1, MSP-1 ... 1808 0.0 AT3G50820.1 | Symbols: PSBO2, PSBO-2, OEC33 | photosystem II su... 966 0.0 > AT5G66570.1 | Symbols: PSBO-1, OEE1, OEE33, OE33, PSBO1, MSP-1 | PS II oxygen-evolving complex 1 | chr5:26568653-26570278 FORWARD LENGTH=1244 Length=1244 Score = 1808 bits (979), Expect = 0.0 Identities = 1067/1110 (96%), Gaps = 3/1110 (0%) Strand=Plus/Plus Query 14 TGTGGCCATGGCAGCCTCTCTCCAATCCACCGCCACATTCCTCCAGTCGGCGAAGATCGC 73 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 85 TGTGGCCATGGCAGCCTCTCTCCAATCCACCGCTACATTCCTCCAGTCGGCGAAGATCGC 144 Query 74 CACCGCTCCTTCTCGCGGCAGTGCTCACCTCCGGTCTACTCAATCCGTCGGCAAATCTTT 133 |||||||||||||||||| ||| |||||||||| || |||||| |||||||||||||||| Sbjct 145 CACCGCTCCTTCTCGCGGAAGTTCTCACCTCCGATCGACTCAAGCCGTCGGCAAATCTTT 204 Query 134 CGGGCTAGATACTTCCTCTGCTCGCCTCACTTGCTCCTTCCAATCTGACTTCAAGGACTT 193 ||||| || |||||||| ||||||||||||||||||||||| |||||||| |||||||| Sbjct 205 TGGGCTCGAAACTTCCTCGGCTCGCCTCACTTGCTCCTTCCAGTCTGACTTTAAGGACTT 264 Query 194 CGCCGGTAAATGCTCCGACGCTGTCAAAATCGCTGGATTCGCTCTTGCCACCTCTGCTCT 253 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 265 CACCGGTAAATGCTCCGACGCTGTCAAAATCGCCGGATTCGCTCTTGCCACCTCTGCTCT 324 Query 254 CGTCGTCTCGGGAGCAAGTGCAGAGGGAGCTCCAAAGAGACTGACCTACGATGAGATTCA 313 ||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||| Sbjct 325 CGTCGTCTCGGGAGCAAGTGCGGAGGGAGCTCCAAAGAGATTGACCTATGATGAGATTCA 384 Query 314 GAGCAAGACATACATGGAAGTGAAAGGAACTGGAACGGCTAACCAGTGCCCAACTATTGA 373 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 385 GAGCAAGACATACATGGAAGTGAAAGGAACTGGAACGGCTAACCAGTGCCCTACTATTGA 444 Query 374 CGGTGGCTCTGAGACATTCTCGTTCAAGCCCGGAAAGTACGCAGGCAAGAAGTTCTGCTT 433 ||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||||||| Sbjct 445 CGGTGGCTCTGAGACTTTCTCGTTCAAACCCGGAAAGTATGCAGGAAAGAAGTTCTGCTT 504 Query 434 CGAGCCTACTTCCTTCACCGTCAAGGCAGACAGTGTAAGCAAGAACGCGCCTCCTGAGTT 493 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 505 CGAGCCTACTTCCTTCACCGTCAAGGCAGACAGTGTAAGCAAGAACGCTCCTCCAGAGTT 564 Query 494 CCAGAACACCAAGCTCATGACCCGTCTCACCTACACCCTTGACGAGATCGAAGGACCCTT 553 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 565 CCAGAACACAAAGCTCATGACCCGTCTTACCTACACCCTTGACGAGATCGAAGGACCCTT 624 Query 554 TGAGGTTGCTTCAGACGGAAGCGTCAATTTCAAGGAAGAAGATGGAATCGACTACGCTGC 613 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 625 CGAGGTTGCTTCAGACGGAAGCGTCAATTTCAAGGAAGAAGATGGAATCGACTATGCTGC 684 Query 614 AGTCACAGTCCAGCTTCCAGGAGGTGAGCGTGTGCCATTCCTCTTT-ACAGTCAAACAGC 672 |||||||||||| |||||||||||||| |||||||||||||| ||| ||||||||||||| Sbjct 685 AGTCACAGTCCAACTTCCAGGAGGTGAACGTGTGCCATTCCT-TTTCACAGTCAAACAGC 743 Query 673 TTGACGCCTCAGGCAAACCAGATAGCTTCACCGGAAAATTCTTGGTTCCATCGTACCGTG 732 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 744 TTGACGCCTCAGGCAAACCAGACAGCTTCACCGGAAAATTCTTGGTTCCATCGTACCGTG 803 Query 733 GCTCTTCCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACAGGATATGACAACGCCGTGG 792 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 804 GCTCTTCCTTCTTGGACCCAAAGGGCCGTGGTGGATCCACAGGATATGACAACGCCGTGG 863 Query 793 CATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTGTAAAGGAGAATGTGAAGAACA 852 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 864 CATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTGTAAAGGAGAACGTGAAGAACA 923 Query 853 CGGCAGCTTCGGTGGGAGAGATCACTCTGAAAGTGACAAAGAGCAAGCCGGAGACAGGAG 912 | || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 924 CTGCCGCTTCAGTGGGAGAGATCACTCTGAAAGTGACAAAGAGCAAGCCGGAGACAGGAG 983 Query 913 AGGTGATCGGAGTGTTCGAGAGTCTTCAGCCGTCAGATACTGACTTGGGTGCTAAGGTAC 972 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 984 AGGTGATCGGAGTGTTCGAGAGTCTTCAGCCGTCGGATACTGACTTGGGTGCTAAGGTAC 1043 Query 973 CAAAGGATGTGAAGATCCAAGGGGTGTGGTATGGTCAACTTGAGTGATCATGTTATTATA 1032 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1044 CAAAGGATGTGAAGATCCAAGGGGTGTGGTATGGTCAACTTGAGTGATCATGTTATTATA 1103 Query 1033 TTT-CTGTTGATTGTGTTTGATGATAATGACAACATCTTTTGATGCTTTCTTCGTTTATC 1091 ||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1104 TTTTCCGTTGATTGTGTTTGATGATAATGATAACATCTTTTGATGCTTTCTTCGTTTATC 1163 Query 1092 TCTCTTATAAAAAATGCACATGCCTAAGAT 1121 ||||||||| |||||||||||||||||||| Sbjct 1164 TCTCTTATATAAAATGCACATGCCTAAGAT 1193 > AT3G50820.1 | Symbols: PSBO2, PSBO-2, OEC33 | photosystem II subunit O-2 | chr3:18890876-18892426 REVERSE LENGTH=1243 Length=1243 Score = 966 bits (523), Expect = 0.0 Identities = 856/1016 (84%), Gaps = 26/1016 (3%) Strand=Plus/Plus Query 20 CATGGCAGCCTCTCTCCAATCCACCGCCACATTCCTCCAGTCGGCGAAGATCGCCACCGC 79 ||||||| | ||||||||| || |||| || || || || |||||||||| ||| | | Sbjct 115 CATGGCAACTTCTCTCCAAGCCGCCGCAACTTTTCTTCAACCGGCGAAGATTGCCGCTTC 174 Query 80 TCCTTCTCGCGGCAGTGCT-CACCTCCGGTC-TACTCAATCCGTCGGCAAAT-CTTTCGG 136 ||||||| | | | || | || ||||| || || ||| |||| ||||| | |||| || Sbjct 175 TCCTTCT--C-GTAATG-TCCATCTCCGATCAAAC-CAAACCGTGGGCAAGTCCTTT-GG 228 Query 137 GCTAGA-TACTTCCTC-TGCTCGCCTCACTTGCTCCT-TCCAATCTGACTTCAAGGACTT 193 | |||| | ||| | | ||| | ||||| |||| || |||| |||||| |||| ||||| Sbjct 229 GTTAGACT-CTT-CACAAGCTAGGCTCACGTGCT-CTCTCCACTCTGACCTCAAAGACTT 285 Query 194 CGCCGGTAAATGCTCCGACGCTGTCAAAATCGCTGGATTCGCTCTTGCCACCTCTGCTCT 253 ||| || |||||||||||||| | ||| ||||| || || ||||| |||||||||||||| Sbjct 286 CGCTGGAAAATGCTCCGACGCCGCCAAGATCGCCGGTTTTGCTCTAGCCACCTCTGCTCT 345 Query 254 CGTCGTCTCGGGAGCAAGTGCAGAGGGAGCTCCAAAGAGACTGACCTACGATGAGATTCA 313 ||| |||||||| || |||| |||||||| |||||||| || || ||||| ||||| || Sbjct 346 CGTTGTCTCGGGGGCCGGTGCGGAGGGAGCACCAAAGAGGCTAACGTACGACGAGATACA 405 Query 314 GAGCAAGACATACATGGAAGTGAAA-GGAACTGGAACGGCTAACCAGTGCCCAACTATTG 372 ||||||||| |||||||| || ||| || || || ||||| |||||||| |||||||| | Sbjct 406 GAGCAAGACTTACATGGAGGT-AAAGGGTACCGGTACGGCAAACCAGTGTCCAACTATCG 464 Query 373 ACGGTGGCTCTGAGACATTCTCGTTC-AAGCCCGGAAAGTACGCAGGCAAGAAGTTCTGC 431 | |||||||||||||||||||||||| ||| | || |||||| ||||||||||||||||| Sbjct 465 ATGGTGGCTCTGAGACATTCTCGTTCAAAG-CTGGTAAGTACACAGGCAAGAAGTTCTGC 523 Query 432 TTCGAGCCTACTTCCTTCACCGTCAAGGCAGACAGTGTAAGCAAGAACGCGCCTCCTGAG 491 |||||||| ||||||||||||||||||||||| || || |||||||| || || || || Sbjct 524 TTCGAGCCCACTTCCTTCACCGTCAAGGCAGATAGCGTCAGCAAGAATGCACCGCCGGAT 583 Query 492 TTCCAGAACACCAAGCTCATGACCCGTCTCACCTACACCCTTGACGAGATCGAAGGACCC 551 ||||| |||||||||||||||||||||||||| ||||| || || ||||||||||||||| Sbjct 584 TTCCAAAACACCAAGCTCATGACCCGTCTCACTTACACACTCGATGAGATCGAAGGACCC 643 Query 552 TTTGAGGTTGCTTCAGACGGAAGCGTCAATTTCAAGGAAGAAGATGGAATCGACTACGCT 611 || ||||||| ||||||||||||||| || ||||||||||||||||| ||||| ||||| Sbjct 644 TTCGAGGTTGGTTCAGACGGAAGCGTGAAGTTCAAGGAAGAAGATGGTATCGATTACGCA 703 Query 612 GCAGTCACAGTCCAGCTTCCAGGAGGTGAGCGTGTGCCATTCCTCTTTACAGTCAAACAG 671 |||||||||||||||||||| ||||| || || ||||| |||||||| || || || ||| Sbjct 704 GCAGTCACAGTCCAGCTTCCGGGAGGAGAACGCGTGCCGTTCCTCTTCACGGTTAAGCAG 763 Query 672 CTTGACGCCTCAGGCAAACCAGATAGCTTCACCGGAAAATTCTTGGTTCCATCGTACCGT 731 || || || ||||| ||||| || ||||||| || || ||||| ||||||||||||||| Sbjct 764 CTCGAGGCTTCAGGGAAACCCGAAAGCTTCAGTGGCAAGTTCTTAGTTCCATCGTACCGT 823 Query 732 GGCTCTTCCTTCTTGGACCCAAAGGGTCGTGGTGGATCCACAGGATATGACAACGCCGTG 791 ||||| ||||| ||||||||||||||||||||||||||||| || || || || || ||| Sbjct 824 GGCTCGTCCTTTTTGGACCCAAAGGGTCGTGGTGGATCCACTGGGTACGATAATGCAGTG 883 Query 792 GCATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCT-TGTAAAGGAGAATGTGAAGAA 850 || ||||| || |||||||||||||||||||| ||||| | || ||| || || ||||| Sbjct 884 GCTTTGCCTGCCGGAGGCAGAGGAGACGAGGAAGAGCTATCCAA-GGAAAACGTCAAGAA 942 Query 851 CACGGCAGCTTCGGTGGGAGAGATCACTCTGAA-AGTGACAAAGAGCAAGCCGGAGACAG 909 |||||| ||||| || |||||||||||| |||| | | ||||||||||| |||||||||| Sbjct 943 CACGGCGGCTTCCGTCGGAGAGATCACTTTGAAGA-TCACAAAGAGCAAACCGGAGACAG 1001 Query 910 GAGAGGTGATCGGAGTGTTCGAGAGTCTTCAGCCGTCAGATACTGACTTGGGTGCTAAGG 969 | || ||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 1002 GTGAAGTGATCGGAGTGTTCGAGAGTCTTCAGCCATCGGATACTGACTTGGGTGCTAAGG 1061 Query 970 TACCAAAGGATGTGAAGATCCAAGGGGTGTGGTATGGTCA-ACTTGAGTGAT-CAT 1023 ||||||| |||||||||||||||||||| ||||| ||||| | ||||||||| ||| Sbjct 1062 TACCAAAAGATGTGAAGATCCAAGGGGTTTGGTACGGTCAGA-TTGAGTGATTCAT 1116 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54969596775 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5