BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg951589 Length=1992 Score E Sequences producing significant alignments: (Bits) Value AT5G66520.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2981 0.0 AT5G66510.2 | Symbols: GAMMA CA3 | gamma carbonic anhydrase 3 |... 137 3e-31 > AT5G66520.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:26551879-26553741 FORWARD LENGTH=1863 Length=1863 Score = 2981 bits (1614), Expect = 0.0 Identities = 1736/1797 (97%), Gaps = 0/1797 (0%) Strand=Plus/Plus Query 174 AGATGCTCAAAACAAGAAGAACTGAAGCAAATCCACGCTCGCATGCTGAAAACTGGCTTG 233 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 AGATGCTCAAAGCAAGAAGAACTGAAGCAAATCCACGCTCGCATGCTGAAAACTGGCTTG 126 Query 234 ATTCAGGATTCTTATGCAATCACAAAGTTTCTTTCTTGCTGCATTTCTTCGACTTCTTCC 293 || |||||||||||||||||||||||||||||||||| |||||||||||| || |||||| Sbjct 127 ATGCAGGATTCTTATGCAATCACAAAGTTTCTTTCTTTCTGCATTTCTTCAACGTCTTCC 186 Query 294 GACTTTTTGCCTTATGCCCAGATTGTGTTTGACGGGTTTGATCGACCAGGTACTTTCTTG 353 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 187 GACTTTTTGCCTTATGCCCAGATTGTGTTTGACGGGTTTGATCGACCAGATACTTTCTTG 246 Query 354 TGGAACCTAATGATCAGAGGGTTCTCGTGCTCAGACGAACCTGAGAGGTCTCTTCTTCTG 413 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 247 TGGAACCTAATGATCAGAGGGTTCTCGTGCTCAGACGAACCCGAGAGGTCTCTTCTCCTG 306 Query 414 TATCAACGTATGCTCTGTTGTTCAGCTCCTCATAACGCATATACTTTTCCGTCTCTTCTC 473 ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 307 TATCAACGTATGCTCTGTTCTTCAGCTCCTCATAACGCGTATACTTTTCCGTCTCTTCTC 366 Query 474 AAAGCTTGTTCGAACCTATCTGCATTTGAAGAAACAACGCAAATTCACGCACAGATCACG 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 367 AAAGCTTGTTCGAACCTATCTGCATTTGAAGAAACAACGCAAATTCACGCACAGATCACG 426 Query 534 AAACTTGGATATGAAAATAATGTATACGCAGTGAATTCGCTGATTAATTCATATGCTGCG 593 |||||||||||||||||| |||| || ||||||||||| ||||||||||||||||||| | Sbjct 427 AAACTTGGATATGAAAATGATGTCTATGCAGTGAATTCTCTGATTAATTCATATGCTGTG 486 Query 594 ACCGGGAACTTCGAGCTAGCTCACCTTCTCTTTGACAGAATGTCCAAACCCGATGCTGTC 653 |||||||| ||| |||||||||||||||||||||||||||| || |||| |||| |||| Sbjct 487 ACCGGGAATTTCAAGCTAGCTCACCTTCTCTTTGACAGAATCCCCGAACCTGATGATGTC 546 Query 654 TCATGGAACTCTGTGATTAAAGGGTACGCAAAAGCTGGAAAAATGGATATTGCGTTAACG 713 || |||||||||||||| ||||| || | |||||||||||||||||||||||| |||||| Sbjct 547 TCGTGGAACTCTGTGATCAAAGGTTATGTAAAAGCTGGAAAAATGGATATTGCATTAACG 606 Query 714 TTATTCAGGAAAATGGCAGAAAAGAATGCTATATCATGGACTACGATGATCTCTGGGTAT 773 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 607 TTATTCAGGAAAATGGCAGAAAAGAATGCTATATCATGGACTACGATGATCTCTGGGTAT 666 Query 774 GTTCAAGCAGGCATGAACAAGGAAGCTCTGCAATTATTTCATGAAATGCAGAATTCAGAT 833 |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 667 GTTCAAGCAGACATGAACAAGGAAGCTCTGCAATTGTTTCATGAAATGCAGAATTCAGAT 726 Query 834 GTTGAGCCTGATAATGTTTCCCTAGCTAATGCTCTCTCAGCTTGCGCTCAGCTCGGAGCA 893 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 727 GTTGAGCCTGATAATGTTTCCCTAGCTAATGCTCTCTCAGCTTGTGCTCAGCTCGGAGCA 786 Query 894 CTCGAGCAAGGGAAATGGATTCATTCCTATCTTAATAAAACAAGAATCAGAATGGACTCT 953 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 787 CTCGAGCAAGGGAAATGGATCCATTCCTATCTTAATAAGACAAGAATCAGAATGGACTCT 846 Query 954 GTTTTGGGTTGTGTTCTTATAGATATGTATGCAAAGTGCGGTGACATGGAAGAAGCTTTG 1013 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 847 GTTTTGGGTTGTGTTCTTATAGATATGTATGCAAAGTGCGGTGAAATGGAAGAAGCTTTG 906 Query 1014 GAAGTTTTCAAGAATATTAAGAAAAAATCAGTGCAAGCATGGACAGCTTTGATTTCCGGA 1073 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 907 GAAGTTTTCAAGAATATTAAGAAAAAATCAGTGCAAGCATGGACAGCTTTGATTTCAGGA 966 Query 1074 TATGCATACCATGGCCATGGAAGAGAAGCAATTAGCAAATTCATGGAGATGCAAAAGATG 1133 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 967 TATGCATACCATGGCCATGGAAGAGAAGCTATTAGCAAATTCATGGAGATGCAAAAGATG 1026 Query 1134 GGAATAAAGCCAAATGTCATAACTTTCACTGCGGTTCTCACGGCTTGCAGCTACACTGGA 1193 ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| ||| Sbjct 1027 GGAATTAAGCCAAATGTGATCACTTTCACTGCGGTTCTCACGGCTTGCAGCTACACAGGA 1086 Query 1194 CTAGTTGAAGAAGGAAAGTTGATATTCTACAGTATGGAGAGAGATTACAACCTGAAACCG 1253 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1087 CTAGTTGAAGAAGGAAAGTTGATATTCTACAGCATGGAGAGAGATTACAACCTGAAACCG 1146 Query 1254 ACCATCGAGCATTATGGCTGTGTTGTTGATTTACTCGGTCGAGCTGGATTGCTAGATGAA 1313 ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| Sbjct 1147 ACCATCGAGCATTATGGCTGTATTGTTGATTTACTCGGTCGAGCTGGATTGCTTGATGAA 1206 Query 1314 GCAAAACGTTTCATTCAGGAGATGCCATTGAAGCCAAATGCTGTGATATGGGGTGCGTTG 1373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1207 GCAAAACGTTTCATTCAGGAGATGCCATTGAAGCCAAATGCTGTGATATGGGGTGCGTTG 1266 Query 1374 CTCAAAGCCTGTCGGATTCACAAAAACATCGAATTGGGAGAGGAAATTGGAGAAATCTTA 1433 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1267 CTCAAAGCCTGTCGAATTCACAAAAACATCGAATTGGGAGAGGAAATTGGAGAAATCTTA 1326 Query 1434 ATTGCAATAGATCCATATCATGGTGGGAGATATGTTCATAAGGCAAATATTCATGCTATG 1493 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 1327 ATTGCAATAGATCCATATCATGGCGGAAGATATGTTCATAAGGCAAATATTCATGCTATG 1386 Query 1494 GGCAAGAAGTGGGACAAAGCAGCTGAAACAAGAAGATTGATGAAAGAACAAGGAGTAGCA 1553 | || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1387 GATAAAAAGTGGGACAAAGCAGCTGAAACAAGAAGATTGATGAAAGAACAAGGAGTAGCA 1446 Query 1554 AAAGTTCCAGGATGTAGTACAATTAGCTTGGACGGGACCACACACGAGTTTTTAGCGGGA 1613 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1447 AAAGTTCCAGGATGTAGTACAATTAGCTTGGAAGGGACCACACACGAGTTTTTAGCGGGA 1506 Query 1614 GACCGATCACATCCAGAGATAGAGAAAATTCAATCTAAATGGAGAATCATGAGAAGGAAA 1673 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1507 GACCGATCACACCCAGAGATAGAGAAAATTCAATCTAAATGGAGAATCATGAGAAGGAAA 1566 Query 1674 CTTGAGGAAAACGGGTACGTACCAGAGTTAGAGGATATGCTGCTTGATCTAGTTGATGAT 1733 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1567 CTTGAGGAAAACGGGTACGTACCAGAGTTAGAAGAGATGCTGCTTGATCTAGTTGATGAT 1626 Query 1734 GATGAAAGAGAGGCTATTGTGCATCAGCACAGCGAGAAATTGGCTATTACATACGGGTTA 1793 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1627 GATGAAAGAGAGGCTATTGTGCATCAGCATAGCGAGAAATTGGCTATTACATACGGGTTA 1686 Query 1794 ATCAAGACTAAACCAGGAACCACTATACGTATAATGAAGAATCTCCGAGTATGCAAAGAC 1853 |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 1687 ATCAAGACTAAACCAGGAACCATTATTCGTATAATGAAGAATCTCCGAGTATGCAAAGAT 1746 Query 1854 TGTCACAAAGTAACGAAACTCATCTCTAAGATATACAAGAGAGATATCGTAATGAGGGAT 1913 ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 1747 TGTCACAAAGTAACGAAGCTCATCTCTAAGATATACAAGAGGGATATTGTAATGAGAGAT 1806 Query 1914 AGGACAAGGTTCCATCATTTCAGAGATGGGAAATGCAGTTGTGGGGACTACTGGTAA 1970 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1807 AGGACAAGGTTCCATCATTTCAGAGATGGGAAATGCAGTTGTGGGGACTACTGGTAA 1863 > AT5G66510.2 | Symbols: GAMMA CA3 | gamma carbonic anhydrase 3 | chr5:26549704-26551604 REVERSE LENGTH=1230 Length=1230 Score = 137 bits (74), Expect = 3e-31 Identities = 78/80 (98%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 1 GATCGATTTACGTTTTGTCAATGAAATCGAAAAGGGGTTTTTCGCCGGAGCCAGAGGAAG 60 ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 80 GATCGATTTGCGTTTTATCAATGAAATCGAAAAGGGGTTTTTCGCCGGAGCCAGAGGAAG 21 Query 61 AGGAGAGAGTGCAGTCTTTG 80 |||||||||||||||||||| Sbjct 20 AGGAGAGAGTGCAGTCTTTG 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 98694271470 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5