BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951652
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65960.1 | Symbols: | GTP binding | chr5:26385348-26387447 ... 1975 0.0
> AT5G65960.1 | Symbols: | GTP binding | chr5:26385348-26387447
FORWARD LENGTH=1497
Length=1497
Score = 1975 bits (1069), Expect = 0.0
Identities = 1178/1230 (96%), Gaps = 9/1230 (1%)
Strand=Plus/Plus
Query 1 GGCGAAGTTGGAGGAGATTGATGGAAAGCCGGCCGGGAGTTTTGGTCGTCGGATCCTCTG 60
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 46 GGCGAAGTTGGAGAAGATTGATGGAAAGCCGACCGGGAGTTTTGGTCGTCGGATCCTCTG 105
Query 61 GCGTCGGCAAGCGCACCCTCCTCTCTCGATTGCTCTCTGTGGAATTTGAGGATTCATCGG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 GCGTCGGCAAGCGCACCCTCCTCTCTCGATTGCTCTCTGTGGAATTTGAGGATTCATCGG 165
Query 121 AGTCACCATCGCAAACAGAAGTTCATGGCTGGACGATTAACACTAAGTATTACACTGCGG 180
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 166 AGTCATCATCTCAAACAGAAGTTCATGGCTGGACGATTAACACTAAGTATTACACTGCGG 225
Query 181 ATGTTTCTGTATGTATATCACATATTTGCGATGACTACTCTCTACCCAATCTCCCTCACT 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 226 ATGTTTCTGTATGTATATCACATATTTGCGATGAATACTCTCTACCCAATCTCCCTAACT 285
Query 241 CACATCCACTGGTGGCGTTAGTTATGGTCTTCGACTTGAGTGAGCTGTCAACTCTTGTTG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 286 CACATCCACTGGTGGCGTTAGTTATGGTCTTCGACTTGAGTGAGCTGTCAACCCTTGTTG 345
Query 301 CTCTTCAAGACTGGGTTTCTCATACCGACATCAACAATTTTGATATATTGTTGTGCATTG 360
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 346 CTCTTCAAGACTGGGTTTCTCATACTGACATCAACAGTTTTGATATATTGTTGTGCATTG 405
Query 361 GTAACAAAGTAGATCGTGTCCCTCATCACCTAGCTCATGATGAATATAGACGACGCCTTT 420
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 406 GTAACAAAGTAGATCGTGTCCCTCATCACCTTGCTCATGATGAATATAGACGGCGCCTTT 465
Query 421 TGAAGGCAACAGACCCCTCTAGA-ATTATGTATTCAGACATTGATGACTTTGGGATCTCC 479
|||||||| |||||||||||||| | | ||||||| ||||||||||||||||||||||||
Sbjct 466 TGAAGGCATCAGACCCCTCTAGAGA-TCTGTATTCGGACATTGATGACTTTGGGATCTCC 524
Query 480 GAAACTGAAGGAAGCAGCTTGTTGGGAAGTCAAGATACATCACTGGATATCAGGGGAGCA 539
|||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||
Sbjct 525 GAAACTGAAGGAAGCAGCTTGTTGGGAAGTGAAGATGCATCACTAGATATCAGGGGAGCA 584
Query 540 TGTCTTGAGTGGTGCTCTGAGAATAACATCGAGTTCATTGAGGCTTGTGCCTCTAATCCT 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 585 TGTCTTGAGTGGTGCTCTGAGAATAACATTGAGTTCATTGAGGCTTGTGCCTCTAATCCT 644
Query 600 GATTTTGACAAGTGTTTGTCAGTCGATGGGGATTCTCAAGGGGTTGAACGCCTATTTGGT 659
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 645 GATTTTGACAAGTGTTTATCAGTCGATGGGGATTCTCAAGGGGTTGAACGTCTATTTGGT 704
Query 660 GCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCGGGTGATAAGATAAATGAT 719
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 705 GCTCTTTCGGCTCATATGTGGCCTGGGATGATTCTGAAATCTGGTGATAGGATAAATGAA 764
Query 720 CCGGTGTTAGCTCAAGGGGAAGAGTTGTCAGAAGAAGAATCTGAATATGAATTGGAGTAT 779
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 CCTGTGTTACCTCAAGGGGAAGAGTTGTCAGAAGAAGAATCTGAATATGAATTGGAGTAT 824
Query 780 GAAGTGCTATCAGCAGGCTCAGGTGATCCATGGGAAAATATGGACGAAAGATGGGTTTCT 839
||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 825 GAAGTGCTATCAGCAGGCTCAGGTGATCCATGGGATAATATTGAAGAAAGATGGGTTTCT 884
Query 840 GCAAGTGAAACGCATTCACATGGAGATGCTGGCGGTTCCACGTCACAGGAAAACCTCCAT 899
|||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 885 GCAAGTGAAACGCATTCACATGCCGATGCTGGCGGATCCACTTCACAGGAAAACCTCCAT 944
Query 900 GTAGAAAATAATATGGTGAAATCGAATAAAGTTGTGGATGAAGAGCTGCGGCCGTCAGGG 959
|||||||||| |||||||||| ||||||||| | | ||||||||||||| ||||||||||
Sbjct 945 GTAGAAAATAGTATGGTGAAACCGAATAAAG-T-T-GATGAAGAGCTGCTGCCGTCAGGG 1001
Query 960 TCACA-GTTAGAGCCGCAAAATGACACTGACAGAGCAATAGTAACAGATGAAAGATCTTT 1018
||| | |||||||| |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1002 TCA-AGGTTAGAGCTGCAAAATGACACTGACAGAGCAATAGTAACAGATGAAAAACCTTT 1060
Query 1019 GGACACAGAAAATGAAAAATGTTATGAGTTTGAAGACGTGGAACAGTTGATGTCAGAAAT 1078
|| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1061 GGGCACAGAAAATGAAAAATGTTACGAGTTTGAAGATGTGGAACAGTTGATGTCAGAAAT 1120
Query 1079 AGGAAACATCCGGGACAACTTGCGATTGATGCCTGATTTCCAGAGGAGGGAAATAGCTGC 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 AGGAAACATCCGGGACAACTTGCGATTGATGCCTGATTTCCAGAGGAGGGAAATAGCTGC 1180
Query 1139 AAATTTAGCGATGAAAATGGCTTCCATGTTTGGAGGTGACAGTGATGACGAGGAAGAACC 1198
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1181 AAATTTAGCGATGAAAATGGCTTCCATGTTTGGAGGTGACACTGATGACGAGGAAGAACC 1240
Query 1199 TGAGTGAGTGTGTTTATATCA-ATTATTGT 1227
||||||||| ||||||||||| || |||||
Sbjct 1241 TGAGTGAGTCTGTTTATATCAGAT-ATTGT 1269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5