BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg951777 Length=778 Score E Sequences producing significant alignments: (Bits) Value AT3G06950.1 | Symbols: | Pseudouridine synthase family protein... 1014 0.0 AT3G06960.1 | Symbols: PDE320, TGD4 | pigment defective 320 | c... 111 8e-24 > AT3G06950.1 | Symbols: | Pseudouridine synthase family protein | chr3:2192685-2194321 FORWARD LENGTH=1223 Length=1223 Score = 1014 bits (549), Expect = 0.0 Identities = 618/652 (95%), Gaps = 2/652 (0%) Strand=Plus/Plus Query 125 TTTGGATAGCTTTCACGCTGCTTTAAACGGTCTTCTTCCTAAAGATATCCGTGTCAGAGA 184 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 526 TTTGGATAGCTTTCACGCTGCTTTGAACGGTCTTCTTCCTAAAGATATCCGTGTCAGAGA 585 Query 185 GCTGAGTGCAGCGGTTCCTGAGTTCCATGCTCGGTTCTCTGCC-CAGAGCAAGGTTTACC 243 |||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||| | Sbjct 586 GCTGAGTGCAGCGGTTCCTGAGTTTCATGCTCGGTTTTCTGCCTCT-AGCAAGGTTTATC 644 Query 244 GCTACCAGATATACAATGACACTTTCATGGACCCGTTCCAGCGTTATTGGGCATACCACT 303 |||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 645 GCTACCAGATATACAACGACACTTTCATGGACCCGTTCCAGCGTCATTGGGCTTACCACT 704 Query 304 GTGCTTATAAACTGAATGCTTCTAAAATGCGGGAAACTGCAGATCTTTTTGTTGGAATGC 363 ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| || Sbjct 705 GTGCTTATAAACTGAATGCTTCTAAAATGCGGGAAGCTGCAAATCTTTTTGTTGGAAAGC 764 Query 364 ATGATGTCTCTGCATTTGCTAACGCTACACGGGAAGATGGAGTACCTGATCCTTTGAAAA 423 ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 765 ATGATTTCTCTGCATTTGCTAACGCTACTCGGGAAGATGGAGTACCTGATCCTTTGAAAA 824 Query 424 GTATATCTCGCTTCTATGTCATTCAAATGGGATCTCTTCTACAGCTTGAAGTTGAAGGTT 483 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 825 CTATATCTCGCTTCGATGTCATTCAAATGGGATCTCTTCTACAGCTTGAAGTTGAAGGTT 884 Query 484 CAGGCTTTTTGTACAGACAAGTCAGAAACATGGTAGCTTTGTTGATTCATATTGGAAAAG 543 | ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| Sbjct 885 CTGGCTTTTTGTACAGACAAGTCAGAAACATGGTAGCTTTGCTGATTCAGATTGGAAAAG 944 Query 544 AATCTCTGGATTCTGACATCGTCCCAATGATTCTGGAAACAAAAGACAGGAGGGTGCTTG 603 || | |||||||| ||||| |||||||||||||| ||||| ||||||||||||||||||| Sbjct 945 AAGCACTGGATTCAGACATTGTCCCAATGATTCTCGAAACCAAAGACAGGAGGGTGCTTG 1004 Query 604 CAAAGTATACTACTTTGCCTGTGCCGCCTCATGGTCTTTGTCTTGTGTCTGTTAAGTATA 663 |||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1005 CAAAGTATACTAGTTTGCCTGCGTCGCCTCATGGTCTTTGTCTTGTGTCTGTTAAGTATA 1064 Query 664 AGGAAGATCATTTAAAGCTTCCATTGGATTGTCCTGTAACTAGTTTTGGTAGACATCACA 723 ||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 1065 AGGAAGATCATCTAAAGCTTCCATTGGATTGTCCTGTTACTAGTTCTGGTAGACATCACA 1124 Query 724 CTATAACAAAATGTAAACTTCCCTTCTATTGAATCATTCTTCTGTTTAACAT 775 ||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 1125 CTATAACAAAATGTAAACTTCCCTTCTATTGAAACATTCTTCTGTTTGACAT 1176 > AT3G06960.1 | Symbols: PDE320, TGD4 | pigment defective 320 | chr3:2194208-2196547 REVERSE LENGTH=1654 Length=1654 Score = 111 bits (60), Expect = 8e-24 Identities = 64/66 (97%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 710 TGGTAGACATCACACTATAACAAAATGTAAACTTCCCTTCTATTGAATCATTCTTCTGTT 769 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1653 TGGTAGACATCACACTATAACAAAATGTAAACTTCCCTTCTATTGAAACATTCTTCTGTT 1594 Query 770 TAACAT 775 | |||| Sbjct 1593 TGACAT 1588 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37826312691 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5