BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg951951
Length=1504
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25150.2 | Symbols: | Nuclear transport factor 2 (NTF2) fam... 2259 0.0
> AT3G25150.2 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr3:9157078-9160100 REVERSE LENGTH=1895
Length=1895
Score = 2259 bits (1223), Expect = 0.0
Identities = 1403/1491 (94%), Gaps = 8/1491 (1%)
Strand=Plus/Plus
Query 21 GCTATGGCGATGTTAGGTGCACAGCAAGTTCCAACAGCAGCTTGTACTCCAGATATGGTT 80
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 343 GCTATGGCGATGTTAGGTGCACAGCAAGTTCCAGCAGCAGCTTGTACTCCAGATATGGTT 402
Query 81 GGGAATGCTTTTGTGCCTCAGTATTATCACATATTGCATCAATCTCCTGAGCATGTTCAT 140
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 403 GGGAATGCTTTTGTGCCCCAGTATTATCACATATTGCATCAATCACCTGAGCATGTTCAC 462
Query 141 AGATTTTACCAAGAGATTAGCAAGTTAGGTCGTCCTGAAGAGAATGGTTTAATGAGCATT 200
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 AGATTTTACCAAGAGATTAGCAAGTTAGGTCGTCCTGAAGAGAATGGTTTAATGAGCATC 522
Query 201 ACTTCTACCTTGCAAGCTATTGACAAGAAGATAATGGAGCTAGGTTACGGTGTAGTCAGT 260
||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||
Sbjct 523 ACTTCTACCTTGCAAGCTATTGACAAGAAGATAATGGCGCTTGGTTACGGTGTAATCAGT 582
Query 261 GCGGAGATTGCAACTGTGGACTCCCAAGAATCTTATGGTGGTGGTGT-TCTTGTACTGGT 319
|| ||||| || ||||||||| | ||||||||| |||| |||||| | | ||||||||||
Sbjct 583 GCAGAGATAGCTACTGTGGACACACAAGAATCTCATGGAGGTGGT-TATATTGTACTGGT 641
Query 320 GACTGGGTATTTGACGGGGAAAGACAGTGTCAGGAGGATGTTTAGTCAGACCTTCTTCCT 379
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 642 GACTGGGTATTTGACGGGAAAAGACAGTGTCAGGAGGACGTTTAGTCAGACCTTCTTCCT 701
Query 380 TGCTCCACAGGAGACAGGATACTTTGTCTTGAATGATATGTTCCGATACAGTGATGAAGC 439
|||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 702 TGCTCCACAGGAGACAGGATACTTTGTCTTGAATGATATGTTTCGATTCATTGATGAAGG 761
Query 440 CGCAATCGTACATGGAAATCAGATTCTAGTGAACAACATCCAAGTTCCTGTCAACACTTA 499
| | ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||
Sbjct 762 CACTGTCGTACATGGAAATCAGATTCCAGTGAACAACGTCCAAGCTCCTGTCAACACTTA 821
Query 500 CCAGGATACAGCTGCTTCAAAAGACATTCCAGATGACTTTGTTCAGGAGAAATATGTCCA 559
|||||| ||||||||| | || || |||||||||||||||||||||||||||||||||||
Sbjct 822 CCAGGACACAGCTGCTGCGAAGGAAATTCCAGATGACTTTGTTCAGGAGAAATATGTCCA 881
Query 560 AGAGAATCATGCTGTTAAGCAAACCGAGGTGTTGTCCAAGAGCATTAATGGGCCTG---A 616
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 882 AGAGAATCATGCTGTTAAGCAAACCGAGGTGTTGTCCAAGAGCATTAATGAGCCTGAAAA 941
Query 617 AGTGTTCATTCCCTCCGAAGATGAACAAGTATCAGCTACAGAAGAAGTTCTGGCGCCTGA 676
|||||||| ||||| ||||||||||||||||||||| ||||||||| ||||| | ||||
Sbjct 942 AGTGTTCACGCCCTCTGAAGATGAACAAGTATCAGCTGCAGAAGAAGCTCTGGTGACTGA 1001
Query 677 AATAGTTAATGAAGCACCAATCGAAGCGCAGAAGGTTGGAGAATCTGATTCTAGGACTGG 736
|| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 1002 AACAGTTAATGAAGCACCAATTGAAGTGCAAAAGGTTGGAGAATCTGATTCTAGGACTGG 1061
Query 737 CGAAGTTCCAAAGAGATCTTATGCATCCATTGTGAA-G--ATGAAAGAGAATGCTGCACC 793
|||| |||||||||||||||||||||| |||||||| | |||||||| |||||||||||
Sbjct 1062 CGAAATTCCAAAGAGATCTTATGCATCAATTGTGAAGGTTATGAAAGAAAATGCTGCACC 1121
Query 794 GATGTCTGCTTCGAAAACTCCAACAAAGGTGGAACCAAAGAAACAAGAAGAGCAAGCCAT 853
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1122 AATGTCTGCTTCGAGAACTCCAACAAAGGTGGAACCAAAGAAACAAGAAGATCAAGCCAT 1181
Query 854 TCATATCCCTCTACCAACACCATTGTCTGAGAAATCAGATTCAGGAGCAAATATAGCGGT 913
|||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 1182 TCATATCCCTCTACCAACACCATTGTCTGAGAAATCAGATTCAGGAGCAAATGTTGCTGT 1241
Query 914 AAATGAGAACAATCACGATAATGAAAGAGCTCTAGGTCCATCCATCTATCTAAAGGGCTT 973
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1242 AAATGAGAACAATCAAGAGAATGAAAGAGCTCTAGGTCCATCCATCTATCTAAAGGGTTT 1301
Query 974 ACCCCTTGATACAACACCAGCCTTGCTTGAGAATGAGTTCCAGAAATTTGGACTTATTAG 1033
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 ACCCCTTGATGCAACACCTGCCTTGCTTGAGAATGAGTTCCAGAAATTTGGACTTATTAG 1361
Query 1034 GACCAATGGAATTCAAGTGAGAAGCCAGAAGGGATTCTGTTTTGGTTTTGTTGAGTTTGA 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 GACCAATGGAATTCAAGTGAGAAGCCAGAAGGGATTCTGTTTTGGTTTTGTTGAGTTTGA 1421
Query 1094 ATCTGCAAGTTCCATGCAAAGCGCTATCGAGGCATCACCTGTCTTGCTCAATGGGCACAA 1153
||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1422 ATCCGCAAGTTCCATGCAAAGCGCTATCGAGGCATCACCTGTCATGCTCAATGGACACAA 1481
Query 1154 AGTAGTTGTGGAGGAAAAGCGATCTACCGCAAGAGGGAACTATAGAGGACGTTCGACATT 1213
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1482 AGTTGTTGTGGAGGAAAAGCGATCTACCGCAAGAGGGAACTATAGAGGACGTTCGACGTT 1541
Query 1214 TGGTGTGAACTCAGGCTACAGAAACGAAGGTGGAAGGGGTCGTGGGAGCTATGGTGGTGG 1273
|||||| ||| ||||||||||||||||||| ||||||||||||||||||| ||| |||||
Sbjct 1542 TGGTGTAAACACAGGCTACAGAAACGAAGGAGGAAGGGGTCGTGGGAGCTTTGGAGGTGG 1601
Query 1274 AAGAGGAGGATATGGCCGGACAGACTTCAACGGATATGGTAATAACAGGGGAAACAATAG 1333
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1602 AAGAGGAGGATATGGCCGGACCGATTTCAACGGATATGGTAATAACAGGGGAAACAATAG 1661
Query 1334 AGGAGGATACGCAAACCGAGCAAATGGTGACGGTGGTGGGTTCCCGAGGGCCAATGGTAA 1393
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1662 AGGCGGATACGCAAACCGAGCAAATGGTGATGGTGGTGGGTTCCCGAGGGCCAATGGTAA 1721
Query 1394 TAACGGACGTGTAAGACGTGGTGGCGGAATTGATGCTAACAGAGCTACTAAACCCGTGGA 1453
|| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1722 CAATGGACGAGTAAGACGTGGTGGCGGAAATGATGCTAACAGAGCTACGAAACCCGTGGA 1781
Query 1454 TGATGCTCCCCGTGTGTCTGTTACTGCGTAAATGTGCTTTTGAACCAAAAA 1504
|||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 1782 TGATGCTCCCCGTGTGTCTGTTGCTGCGTAAATGTGCTTTTGAAACAAAAA 1832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74196405510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5