BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952145
Length=822
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70530.1 | Symbols: CRK3 | cysteine-rich RLK (RECEPTOR-like ... 1099 0.0
> AT1G70530.1 | Symbols: CRK3 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 3 | chr1:26588750-26591379 REVERSE LENGTH=1941
Length=1941
Score = 1099 bits (595), Expect = 0.0
Identities = 720/778 (93%), Gaps = 17/778 (2%)
Strand=Plus/Plus
Query 23 ATGCCGATTCTAACTCTTCTTCTTCTTATTCTTCCTCTGGGtttttttATAAACCCTTCT 82
||||||||||| |||||||||||||||| | ||||||||| ||||||| |||||||
Sbjct 1 ATGCCGATTCTGACTCTTCTTCTTCTTA----T--TCTGGGTTTGTTTATAAGCCCTTCT 54
Query 83 GTTTCAGACTCGAGAGGAG-CGACGGTGGCTCAGATATGCAGCAACAGAACAAC-ACCGC 140
||||||||||||||||||| | || |||||||||||||||| |||||||||||| | |||
Sbjct 55 GTTTCAGACTCGAGAGGAGAC-ACAGTGGCTCAGATATGCAACAACAGAACAACGA-CGC 112
Query 141 CGCAACAGAGAAGTCTCTTCGTCA-AAACTTTCCTTGCCGCTATGGACGCCGTATCTCCA 199
|||||||||||||||||||||||| || |||||| ||||| |||||||| || ||||||
Sbjct 113 CGCAACAGAGAAGTCTCTTCGTCACCAA-TTTCCTCGCCGCCATGGACGCGGTCTCTCCA 171
Query 200 CTTGTGGAAGCTAAAGGTTATGGCCAAGTGGTCAACAACGCAAACGGAAATC-TAACCGT 258
|| ||||||||||||||||| || |||||||| ||||| | |||||| | |||||||
Sbjct 172 CTAGTGGAAGCTAAAGGTTACGGACAAGTGGT---CAACGGTACCGGAAA-CTTAACCGT 227
Query 259 CTACGCTTATGGAGAGTGTATAAAAGATCTTAATAAGAAAGACTGTGACTTGTGTTTCGC 318
||||||||| ||||||||||||||||||||| |||||||||| || ||||||||||||||
Sbjct 228 CTACGCTTACGGAGAGTGTATAAAAGATCTTGATAAGAAAGATTGCGACTTGTGTTTCGC 287
Query 319 TCAGATCAAAGCTAAAGTCCCTATTTGCTTACCTTTCCAAAGAGGTACTCGTGGTGGTCA 378
|||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 288 TCAGATCAAAGCTAAAGTTCCTCGTTGCTTACCTTTCCAAAAAGGTACTCGTGGTGGTCA 347
Query 379 AGTCTTCTCAGATGGTTGCTACATCAGGTACGATGATTACAATTTCTTTAACGAGACCTT 438
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||
Sbjct 348 AGTCTTCTCAGATGGTTGCTACATCAGGTACGATGACTACAATTTCTATAACGAGACGTT 407
Query 439 AGGCTTGCAAGATCGGACAGTTTGTGCTCCAAAGGAGATAACCGGAGTAAACCGGACGGT 498
| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 408 AAGCTTGCAAGACCGGACAGTTTGTGCTCCAAAGGAGATTACCGGAGTAAACCGGACGGT 467
Query 499 ATTCCGGGATAACGCTGCGGAGTTGGTGAAGAACATGAGTGTGGAGGCGGTGAGAAATGG 558
||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 468 ATTTCGGGATAACGCTGCAGAGTTGGTTAAGAACATGAGTGTGGAGGCGGTGAGAAATGG 527
Query 559 TGGATTCTATGCTGGTTTTGTGGATAGACATAATGTGACGGTTCACGGTCTGGCTCAGTG 618
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 528 TGGATTCTATGCTGGTTTTGTGGATAGACATAACGTGACGGTTCATGGTCTGGCTCAGTG 587
Query 619 TTGGGAGACTCTTAATCGTAGTGGTTGTGTTGAGTGTTTGAGTAAAGCTTCAGTGAGTAT 678
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 588 TTGGGAGACTCTTAATAGAAGTGGTTGTGTTGAGTGTTTGAGTAAAGCTTCAGTGAGGAT 647
Query 679 TGGTTCTTGTTTGGTTAATGAAGAAGGTCGAGTTCTTAGTGCTGGTTGTTATATGAGATT 738
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 648 TGGTTCTTGTTTGGTTAATGAAGAAGGTCGAGTTCTTAGTGCTGGTTGCTATATGAGGTT 707
Query 739 TTCTACTCAAAAGTTTTATAACAATTCTGGAAATTCCACATCAGATGGTAATGGTGGT 796
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 708 TTCTACTCAAAAGTTTTATAACAATTCTGGAAATTCTACATCAGATGGTAATGGTGGT 765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40036615159
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5