BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952321

Length=218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G40670.1 | Symbols:  | PQ-loop repeat family protein / trans...   100    4e-21


> AT5G40670.1 | Symbols:  | PQ-loop repeat family protein / transmembrane 
family protein | chr5:16285711-16287793 FORWARD LENGTH=1272
Length=1272

 Score =  100 bits (54),  Expect = 4e-21
 Identities = 60/63 (95%), Gaps = 0/63 (0%)
 Strand=Plus/Plus

Query  48   AGCTATATGTTTCTTCATAGCATTACCTACACACTCTTGGCTATGGCTCATCTCGATCTT  107
            |||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct  662  AGCTATCTGTTTCTTCATAGCATTACCTACACACTCTTGGCTATGGCTCATTTCAATCTT  721

Query  108  CAA  110
            |||
Sbjct  722  CAA  724



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9751943306


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5