BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952342 Length=646 Score E Sequences producing significant alignments: (Bits) Value AT1G54430.1 | Symbols: | transposable element gene | chr1:2031... 122 3e-27 > AT1G54430.1 | Symbols: | transposable element gene | chr1:20313856-20319554 REVERSE LENGTH=4920 Length=4920 Score = 122 bits (66), Expect = 3e-27 Identities = 87/97 (90%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 225 GTACTACAAAAGAATGGGTGGTCTTATGTGTCATGTACTGGGTGTAACCGAAAATTGGAC 284 ||||| ||||||||||||||||||||||||||||||||||| |||| | |||||||||| Sbjct 864 GTACTGCAAAAGAATGGGTGGTCTTATGTGTCATGTACTGGATGTAGCAGAAAATTGGAA 923 Query 285 AAGGTTGGCAATGCTTTACGCTGC-AGCAAATGTGTT 320 || ||||| |||| |||||||||| | |||||||||| Sbjct 924 AAAGTTGGAAATGTTTTACGCTGCTA-CAAATGTGTT 959 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31195405287 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5