BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg952342

Length=646
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G54430.1 | Symbols:  | transposable element gene | chr1:2031...   122    3e-27


> AT1G54430.1 | Symbols:  | transposable element gene | chr1:20313856-20319554 
REVERSE LENGTH=4920
Length=4920

 Score =  122 bits (66),  Expect = 3e-27
 Identities = 87/97 (90%), Gaps = 2/97 (2%)
 Strand=Plus/Plus

Query  225  GTACTACAAAAGAATGGGTGGTCTTATGTGTCATGTACTGGGTGTAACCGAAAATTGGAC  284
            ||||| ||||||||||||||||||||||||||||||||||| |||| | |||||||||| 
Sbjct  864  GTACTGCAAAAGAATGGGTGGTCTTATGTGTCATGTACTGGATGTAGCAGAAAATTGGAA  923

Query  285  AAGGTTGGCAATGCTTTACGCTGC-AGCAAATGTGTT  320
            || ||||| |||| |||||||||| | ||||||||||
Sbjct  924  AAAGTTGGAAATGTTTTACGCTGCTA-CAAATGTGTT  959



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31195405287


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5