BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg952462
Length=554
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31570.1 | Symbols: ATGPX2, GPX2 | glutathione peroxidase 2 ... 867 0.0
> AT2G31570.1 | Symbols: ATGPX2, GPX2 | glutathione peroxidase
2 | chr2:13437974-13439881 REVERSE LENGTH=853
Length=853
Score = 867 bits (469), Expect = 0.0
Identities = 523/549 (95%), Gaps = 4/549 (1%)
Strand=Plus/Plus
Query 1 AGAGAGAGACCATA-GACACTGCAAATGGCGGATGAATCTCCAAAGTCTATCTACGACTT 59
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 83 AGAAAGAGACCA-ACGACACTGCAAATGGCGGATGAATCTCCAAAGTCTATCTACGACTT 141
Query 60 CACCGTCAAGGATATCGGAGGTAACGATGTGAGTTTGAACCAATACAAAGGCAAAACTCT 119
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 142 CACCGTCAAGGATATCGGAGGTAACGATGTGAGTTTGGACCAATACAAAGGCAAAACTCT 201
Query 120 TCTGATTGTCAATGTTGCTTCCAAATGTGGTCTGACTGATGCCAACTACAAGGAACTGAA 179
| || |||| || ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 202 TTTGGTTGTAAACGTTGCTTCCAAATGTGGTCTGACGGATGCGAACTACAAGGAACTGAA 261
Query 180 TGTTCTGTACGAGAAATACAAGGAGCAAGGGTTGGAGATATTAGCATTCCCTTGTAACCA 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 262 TGTTCTGTACGAGAAATACAAGGAGCAAGGGTTGGAGATATTAGCATTCCCGTGTAATCA 321
Query 240 GTTCTTAGGACAAGAACCAGGTAACAATGAAGAGATTCAACAAACTGTCTGCACCAGGTT 299
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 322 GTTCTTAGGACAAGAACCAGGAAACAATGAAGAGATTCAACAAACTGTCTGCACCAGGTT 381
Query 300 CAAAGCTGAATTCCCCATCTTTGACAAGGTGGATGTGAACGGGAAAAACACGGCGCCATT 359
|||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 382 CAAAGCTGAATTCCCCATCTTTGACAAGGTGGATGTGAACGGTAAGAACACGGCACCATT 441
Query 360 ATACAAATACTTGAAAGCAGAGAAAGGAGGTTTGCTCATTGATGCCATCAAATGGAATTT 419
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 442 ATACAAGTACTTGAAAGCAGAGAAAGGAGGTTTGCTCATTGATGCTATCAAATGGAACTT 501
Query 420 CACCAAATTCTTGGTTTCTCCTGATGGCAAAGTCTTACAGAGATATTCTCCCAGAACCTC 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 502 CACCAAATTCTTGGTTTCTCCTGATGGCAAGGTCTTACAGAGATATTCTCCCAGAACCTC 561
Query 480 TCCTCTTCAATTCGAGAAGGACATTCAAAAT-CTGTTGGGACAGGCTTCTTCTTGATCAT 538
||||||||||||||||||||||||||||| | | |||||||||||| ||||||| ||||
Sbjct 562 TCCTCTTCAATTCGAGAAGGACATTCAAACTGC-GTTGGGACAGGCCTCTTCTTAATCAC 620
Query 539 CAGAAGAAG 547
|||||||||
Sbjct 621 CAGAAGAAG 629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26573863763
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5