BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg952470 Length=1010 Score E Sequences producing significant alignments: (Bits) Value AT2G39800.1 | Symbols: P5CS1, ATP5CS | delta1-pyrroline-5-carbo... 1242 0.0 AT3G55610.1 | Symbols: P5CS2 | delta 1-pyrroline-5-carboxylate ... 756 0.0 > AT2G39800.1 | Symbols: P5CS1, ATP5CS | delta1-pyrroline-5-carboxylate synthase 1 | chr2:16598164-16603319 REVERSE LENGTH=2886 Length=2886 Score = 1242 bits (672), Expect = 0.0 Identities = 718/740 (97%), Gaps = 4/740 (1%) Strand=Plus/Plus Query 272 AGCTTGATGATGTTATCGATCTTGTGATCCCAAGAGGCAGCAACAAGCTTGTTACTCAGA 331 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1816 AGCTTGATGACGTTATCGATCTTGTGATCCCAAGAGGAAGCAACAAGCTTGTTACTCAGA 1875 Query 332 TAAAAAATACTACAAAAATTCCTGTGCTTGGTCATGCTGATGGAATCTGTCATGTATATG 391 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 1876 TAAAAAATACTACAAAAATCCCTGTGCTAGGTCATGCTGATGGAATCTGTCATGTATATG 1935 Query 392 TCGACAAGGCTTGTGATACGGATATGGCAAAGCGCATAGTTTCTGATGCAAAGTTGGACT 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1936 TCGACAAGGCTTGTGATACGGATATGGCAAAGCGCATAGTTTCTGATGCAAAGTTGGACT 1995 Query 452 ATCCAGCAGCCTGTAATGCGATGGAAACCCTTCTTGTGCATAAGGATCTAGAGCAGAATG 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1996 ATCCAGCAGCCTGTAATGCGATGGAAACCCTTCTTGTGCATAAGGATCTAGAGCAGAATG 2055 Query 512 CTGTGCTCAATGAGCTTATTTTTGCTCTGCAGAGCAATGGAGTCACTTTGTATGGTGGAC 571 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2056 CTGTGCTTAATGAGCTTATTTTTGCTCTGCAGAGCAATGGAGTCACTTTGTATGGTGGAC 2115 Query 572 CAAGGGCAAGTGCA-ATACTGAACATACCAGAAGCACGGTCATTCAACCATGAGTACTGT 630 ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2116 CAAGGGCAAGTA-AGATACTGAACATACCAGAAGCACGGTCATTCAACCATGAGTACTGT 2174 Query 631 GCCAAGGCTTGCACTGTTGAAGTTGTTGAAGACGTTTATGGTGCTATAGATCACATTCAC 690 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2175 GCCAAGGCTTGCACTGTTGAAGTTGTAGAAGACGTTTATGGTGCTATAGATCACATTCAC 2234 Query 691 CGACATGGAAGTGCACACACAGACTGCATTGTGACAGAGGATCACGAAGTTGCAGAGCTA 750 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2235 CGACATGGGAGTGCACACACAGACTGCATTGTGACAGAGGATCACGAAGTTGCAGAGCTA 2294 Query 751 TTCCTTCGCCAAGTGGACAGCGCTGCTGTTTTCCACAACGCAAGCACACGATTCTCAGAT 810 ||||||||||||||||| ||||||||||| ||||||||||| |||||| ||||||||||| Sbjct 2295 TTCCTTCGCCAAGTGGATAGCGCTGCTGTGTTCCACAACGCCAGCACAAGATTCTCAGAT 2354 Query 811 GGTTTCCGATTTGGACTTGGTGCTGAGGTGGGAGTAAGCACGGGCCGTATCCATGCTCGT 870 ||||||||||||||||||||||| |||||||| |||||||||||| | |||||||||||| Sbjct 2355 GGTTTCCGATTTGGACTTGGTGCAGAGGTGGGGGTAAGCACGGGCAGGATCCATGCTCGT 2414 Query 871 GGTCCAGTCGGGGTCGAAGGATTACTTACAACGAGATGGATAATGAGAGGAAAAGGACAA 930 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2415 GGTCCAGTCGGGGTCGAAGGATTACTTACAACGAGATGGATAATGAGAGGAAAAGGACAA 2474 Query 931 GTTGTCGACGGAGACAATGGAATTGTTTACACCCATCAGGACATTCCCATCCAAGCTTAA 990 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2475 GTTGTCGACGGAGACAATGGAATTGTTTACACCCATCAGGACATTCCCATCCAAGCTTAA 2534 Query 991 AACAAAACGTC-GAGTGTGT 1009 | ||| || || |||||||| Sbjct 2535 A-CAAGACTTCCGAGTGTGT 2553 Score = 244 bits (132), Expect = 1e-63 Identities = 146/153 (95%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 34 AGTGGTAATGGTCTTCTGTTGAAGGGTGGAAAAGAGGCCCGGCGATCAAATGCTATCTTA 93 ||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 1665 AGTGGAAATGGTCTTCTGCTGAAGGGTGGAAAGGAGGCCCGGCGATCAAATGCTATCTTA 1724 Query 94 CACAAGGTGATTACTGATGCAATTCCAGAGACGGTCGGGGGTAAACTCATTGGACTTGTG 153 ||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 1725 CACAAGGTGATCACTGATGCAATTCCAGAGACTGTTGGGGGTAAACTCATTGGACTTGTG 1784 Query 154 ACTTCAAGAGAAGAGATTCCTGATTTGCTCAAG 186 ||||||||||||||||||||||||||||| ||| Sbjct 1785 ACTTCAAGAGAAGAGATTCCTGATTTGCTTAAG 1817 Score = 65.8 bits (35), Expect = 8e-10 Identities = 35/35 (100%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 1 TTGTTTTTGAATCCCGACCTGATGCACTTGTACAG 35 ||||||||||||||||||||||||||||||||||| Sbjct 1609 TTGTTTTTGAATCCCGACCTGATGCACTTGTACAG 1643 > AT3G55610.1 | Symbols: P5CS2 | delta 1-pyrroline-5-carboxylate synthase 2 | chr3:20624020-20629093 REVERSE LENGTH=2543 Length=2543 Score = 756 bits (409), Expect = 0.0 Identities = 608/705 (86%), Gaps = 10/705 (1%) Strand=Plus/Plus Query 272 AGCTTGATGATGTTATCGATCTTGTGATCCCAAGAGGCAGCAACAAGCTTGTTACTCAGA 331 |||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| | Sbjct 1540 AGCTTGATGACGTTATTGATCTTGTGATCCCAAGAGGCAGCAACAAGCTTGTTTCTCAAA 1599 Query 332 TAAAAAA-TACTACAAAAATTCCTGTGCTTGGTCATGCTGATGGAATCTGTCATGTATAT 390 ||||||| | | || ||||| || ||||| || ||||||||||||||||||||||||||| Sbjct 1600 TAAAAAACT-CGACGAAAATCCCAGTGCTAGGCCATGCTGATGGAATCTGTCATGTATAT 1658 Query 391 GTCGACAAGGCTTGTGATAC-GGATATGGCAAAGCGCATAGTTTCTGATGCAAAGTTGGA 449 || || ||| || || | || ||| |||||||||||||| ||||| |||||||||||||| Sbjct 1659 GTTGATAAGTCTGGT-AAACTGGACATGGCAAAGCGCATTGTTTCCGATGCAAAGTTGGA 1717 Query 450 CTATCCAGCAGCCTGTAATGCGATGGAAACCCTTCTTGTGCATAAGGATCTAGAGCAGAA 509 ||||||||||||||||||||||||||||||||||||||| ||||| ||| | |||||||| Sbjct 1718 CTATCCAGCAGCCTGTAATGCGATGGAAACCCTTCTTGTACATAAAGATTTGGAGCAGAA 1777 Query 510 TGCTGTGCTCAATGAGCTTATTTTTGCTCTGCAGAGCAATGGAGTCACTTTGTATGGTGG 569 || | | ||| |||| ||||||| || |||||| | ||| || ||||||||||||||||| Sbjct 1778 TGGTTTTCTCGATGATCTTATTTATGTTCTGCAAACCAAAGGCGTCACTTTGTATGGTGG 1837 Query 570 ACCAAGGGCAAGTGCAATACTGAACATACCAGAAGCACGGTCATT-CAACCATGAGTACT 628 ||||| |||||||||| |||||| || || ||| || ||||| || ||| |||||| Sbjct 1838 GCCAAGAGCAAGTGCAAAACTGAATATTCCGGAAACAAAATCATTTCA-CCACGAGTACA 1896 Query 629 GTGCCAAGGCTTGCACTGTTGAAGTTGTTGAAGACGTTTATGGTGCTATAGATCACATTC 688 || ||||||| ||||| |||||| |||| |||||||| ||||||||||||||||| |||| Sbjct 1897 GTTCCAAGGCCTGCACCGTTGAAATTGTAGAAGACGTATATGGTGCTATAGATCATATTC 1956 Query 689 ACCGACATGGAAGTGCACACACAGACTGCATTGTGACAGAGGATCAC-GAAGTTGCAGAG 747 ||| |||||||||||||||||| || ||||| ||||| || ||| | ||||| ||||| Sbjct 1957 ACCAACATGGAAGTGCACACACTGATTGCATAGTGACGGAAGAT-AGTGAAGTAGCAGAA 2015 Query 748 CTATTCCTTCGCCAAGTGGACAGCGCTGCTGTTTTCCACAACGCAAGCACACGATTCTCA 807 ||||||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||| Sbjct 2016 ATATTCCTCCGCCAAGTGGACAGTGCTGCTGTTTTCCACAATGCAAGCACAAGATTCTCT 2075 Query 808 GATGGTTTCCGATTTGGACTTGGTGCTGAGGTGGGAGTAAGCACGGGCCGTATCCATGCT 867 |||||||| | || ||||||||||||||||||||| ||||||| || | || ||||| Sbjct 2076 GATGGTTTTAGGTTCGGACTTGGTGCTGAGGTGGGAATAAGCACAAGCAGGATTCATGCC 2135 Query 868 CGTGGTCCAGTCGGGGTCGAAGGATTACTT-ACAACGAGATGGATAATGAGAGGAAAAGG 926 ||||||||||| || || ||||||||| || ||||| |||||||||||||||||||| || Sbjct 2136 CGTGGTCCAGTTGGAGTTGAAGGATTA-TTGACAACAAGATGGATAATGAGAGGAAAGGG 2194 Query 927 ACAAGTTGTCGACGGAGACAATGGAATTGTTTACACCCATCAGGA 971 ||||||||| || |||||||||||||| |||||||||||| |||| Sbjct 2195 ACAAGTTGTGGATGGAGACAATGGAATCGTTTACACCCATAAGGA 2239 Score = 211 bits (114), Expect = 1e-53 Identities = 140/153 (92%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 34 AGTGGTAATGGTCTTCTGTTGAAGGGTGGAAAAGAGGCCCGGCGATCAAATGCTATCTTA 93 ||||| |||||||||||| ||||||||||||| ||||| || |||||||||||||||||| Sbjct 1389 AGTGGAAATGGTCTTCTGCTGAAGGGTGGAAAGGAGGCTCGTCGATCAAATGCTATCTTA 1448 Query 94 CACAAGGTGATTACTGATGCAATTCCAGAGACGGTCGGGGGTAAACTCATTGGACTTGTG 153 ||||||||||| |||||||||||||| ||||| || || ||||||||||| ||||||||| Sbjct 1449 CACAAGGTGATCACTGATGCAATTCCGGAGACTGTTGGAGGTAAACTCATAGGACTTGTG 1508 Query 154 ACTTCAAGAGAAGAGATTCCTGATTTGCTCAAG 186 || |||||||| ||||||||||||||||||||| Sbjct 1509 ACCTCAAGAGAGGAGATTCCTGATTTGCTCAAG 1541 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49480634795 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5