BLASTN 2.2.29+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20101214_updated
41,671 sequences; 64,867,051 total letters
Query= CBF1_halleri
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25490.1 | Symbols: CBF1, DREB1B, ATCBF1 | C-repeat/DRE bind... 795 0.0
AT4G25470.1 | Symbols: CBF2, DREB1C, FTQ4, ATCBF2 | C-repeat/DR... 712 0.0
AT4G25480.1 | Symbols: DREB1A, CBF3, ATCBF3 | dehydration respo... 667 0.0
> AT4G25490.1 | Symbols: CBF1, DREB1B, ATCBF1 | C-repeat/DRE binding
factor 1 | chr4:13021780-13022725 REVERSE LENGTH=946
Length=946
Score = 795 bits (430), Expect = 0.0
Identities = 576/646 (89%), Gaps = 12/646 (2%)
Strand=Plus/Plus
Query 1 ATGAACTCATTTTCTGCTTTTTCTGAAATGTTTGGCTCCGATGGCGAGTCTCAAGTTTCT 60
|||||||||||||| ||||||||||||||||||||||||||| |||| | | ||
Sbjct 164 ATGAACTCATTTTCAGCTTTTTCTGAAATGTTTGGCTCCGATTACGAG-C-C-----TC- 215
Query 61 TCAGGCGGAGATTATTGTCCGAAGTTGGCGACAAGCTGTCCGAAGAAACCGGCTGGTCGA 120
|||||||||||||||||||| |||||| || || ||||||||||||||||| || ||
Sbjct 216 -AAGGCGGAGATTATTGTCCGACGTTGGCCACGAGTTGTCCGAAGAAACCGGCGGGCCGT 274
Query 121 AAGAAGTTTCGCGAAACTCGTCACCCAATTTACAGAGGAGTTCGTCGGAGAAACTCCGGT 180
||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 275 AAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGT 334
Query 181 AAGTGGGTGTGTGAAGTGAGAGAGCCAAACAAGAAGTCAAGGATTTGGCTTGGAACTTTC 240
|||||||| | |||||||||||||||||||||||| | ||||||||||| || ||||||
Sbjct 335 AAGTGGGTTTCTGAAGTGAGAGAGCCAAACAAGAAAACCAGGATTTGGCTCGGGACTTTC 394
Query 241 CAAACCGCAGAGATGGCAGCTCGTGCTCACGATGTCGCCGCATTAGCCCTCCGCGGCAGA 300
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||| ||
Sbjct 395 CAAACCGCTGAGATGGCAGCTCGTGCTCACGACGTCGCTGCATTAGCCCTCCGTGGCCGA 454
Query 301 TCAGCCTGTCTCAATTTTGCTGACTCGGCTTGGCGGCTACGAATCCCCGAATCAACAAGC 360
||||| |||||||| || ||||||||||||||||||||||||||||| || |||||| ||
Sbjct 455 TCAGCATGTCTCAACTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAGTCAACATGC 514
Query 361 GCCAAAGATATCCAGAAAGCTGCGGCTGAAGCGGCGTTGGCTTTCCAAGATGAGAGGTGT 420
||||| |||||||| ||||| || |||||||||||||||||||| |||||||||| ||||
Sbjct 515 GCCAAGGATATCCAAAAAGCGGCTGCTGAAGCGGCGTTGGCTTTTCAAGATGAGACGTGT 574
Query 421 GATACGAC--CAATG-ATCATGGCCTGGACATGGAGGAGACGATGGTGGAAGCTATTTAT 477
|||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 GATACGACGACCACGAATCATGGCCTGGACATGGAGGAGACGATGGTGGAAGCTATTTAT 634
Query 478 ACGCCGGAACAGAGCGAAGATGCGTTTTATATGGATGAGGAGACGATGATTGGGATGCCG 537
|| |||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||
Sbjct 635 ACACCGGAACAGAGCGAAGGTGCGTTTTATATGGATGAGGAGACAATGTTTGGGATGCCG 694
Query 538 AGTTTGTTGGATAATATGGCCCAAGGAATGCTCTTGCCGCCGCCGTCCGTTCAATGGAAC 597
| |||||||||||||||||| |||| ||||| || ||||||||||| |||||||||||
Sbjct 695 ACTTTGTTGGATAATATGGCTGAAGGCATGCTTTTACCGCCGCCGTCTGTTCAATGGAAT 754
Query 598 TATAATTACGACGGCGAGGGAGATGGTGACGTGTCGTTGTGGAGTT 643
||||||| |||||||| |||||||||||||||||| | |||||||
Sbjct 755 CATAATTATGACGGCGAAGGAGATGGTGACGTGTCGCTTTGGAGTT 800
> AT4G25470.1 | Symbols: CBF2, DREB1C, FTQ4, ATCBF2 | C-repeat/DRE
binding factor 2 | chr4:13015277-13016220 REVERSE LENGTH=944
Length=944
Score = 712 bits (385), Expect = 0.0
Identities = 563/651 (86%), Gaps = 3/651 (0%)
Strand=Plus/Plus
Query 1 ATGAACTCATTTTCTGCTTTTTCTGAAATGTTTGGCTCCGATGGCGAGTCTCAAGTTTCT 60
||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct 135 ATGAACTCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTCCGGTTTCC 194
Query 61 TCAGGCGGAGATTATTGTCCGAAGTTGGCGACAAGCTGTCCGAAGAAACCGGCTGGTCGA 120
|||||||| ||||| |||||||| | || || ||||| || |||||||| || || |
Sbjct 195 TCAGGCGGTGATTACAGTCCGAAGCTTGCCACGAGCTGCCCCAAGAAACCAGCGGGAAGG 254
Query 121 AAGAAGTTTCGCGAAACTCGTCACCCAATTTACAGAGGAGTTCGTCGGAGAAACTCCGGT 180
||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 255 AAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGT 314
Query 181 AAGTGGGTGTGTGAAGTGAGAGAGCCAAACAAGAAGTCAAGGATTTGGCTTGGAACTTTC 240
|||||||||||||| ||||||||||||||||||| | ||||||||||| || ||||||
Sbjct 315 AAGTGGGTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTCGGGACTTTC 374
Query 241 CAAACCGCAGAGATGGCAGCTCGTGCTCACGATGTCGCCGCATTAGCCCTCCGCGGCAGA 300
|||||||| ||||||||||||||||||||||| |||||||| |||| ||||| ||||||
Sbjct 375 CAAACCGCTGAGATGGCAGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAGA 434
Query 301 TCAGCCTGTCTCAATTTTGCTGACTCGGCTTGGCGGCTACGAATCCCCGAATCAACAAGC 360
|| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 435 TCTGCCTGTCTCAATTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAATCAACCTGT 494
Query 361 GCCAAAGATATCCAGAAAGCTGCGGCTGAAGCGGCGTTGGCTTTCCAAGATGAGAGGTGT 420
||||| || ||||| || || ||||||||||| |||||| ||| |||||||||| ||||
Sbjct 495 GCCAAGGAAATCCAAAAGGCGGCGGCTGAAGCCGCGTTGAATTTTCAAGATGAGATGTGT 554
Query 421 GATACGACCA---ATGATCATGGCCTGGACATGGAGGAGACGATGGTGGAAGCTATTTAT 477
||| ||| | ||| |||||| || |||||||||||||| ||||||| |||||||||
Sbjct 555 CATATGACGACGGATGCTCATGGTCTTGACATGGAGGAGACCTTGGTGGAGGCTATTTAT 614
Query 478 ACGCCGGAACAGAGCGAAGATGCGTTTTATATGGATGAGGAGACGATGATTGGGATGCCG 537
||||||||||||||| |||||||||||||||||||||| ||| ||||| | |||||| |
Sbjct 615 ACGCCGGAACAGAGCCAAGATGCGTTTTATATGGATGAAGAGGCGATGTTGGGGATGTCT 674
Query 538 AGTTTGTTGGATAATATGGCCCAAGGAATGCTCTTGCCGCCGCCGTCCGTTCAATGGAAC 597
|||||||||||||| |||||| |||| ||||| || ||| ||||||| ||||||||||||
Sbjct 675 AGTTTGTTGGATAACATGGCCGAAGGGATGCTTTTACCGTCGCCGTCGGTTCAATGGAAC 734
Query 598 TATAATTACGACGGCGAGGGAGATGGTGACGTGTCGTTGTGGAGTTTTTAA 648
||||||| || | ||||||||||| ||||||||| || ||||| | ||||
Sbjct 735 TATAATTTTGATGTCGAGGGAGATGATGACGTGTCCTTATGGAGCTATTAA 785
> AT4G25480.1 | Symbols: DREB1A, CBF3, ATCBF3 | dehydration response
element B1A | chr4:13018214-13019121 REVERSE LENGTH=908
Length=908
Score = 667 bits (361), Expect = 0.0
Identities = 555/651 (85%), Gaps = 3/651 (0%)
Strand=Plus/Plus
Query 1 ATGAACTCATTTTCTGCTTTTTCTGAAATGTTTGGCTCCGATGGCGAGTCTCAAGTTTCT 60
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 119 ATGAACTCATTTTCTGCTTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTTCGGTTTCC 178
Query 61 TCAGGCGGAGATTATTGTCCGAAGTTGGCGACAAGCTGTCCGAAGAAACCGGCTGGTCGA 120
|||||||| |||||| ||||| | | |||| ||||| || ||||||||||| |||||
Sbjct 179 TCAGGCGGTGATTATATTCCGACGCTTGCGAGCAGCTGCCCCAAGAAACCGGCGGGTCGT 238
Query 121 AAGAAGTTTCGCGAAACTCGTCACCCAATTTACAGAGGAGTTCGTCGGAGAAACTCCGGT 180
||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 239 AAGAAGTTTCGTGAGACTCGTCACCCAATATACAGAGGAGTTCGTCGGAGAAACTCCGGT 298
Query 181 AAGTGGGTGTGTGAAGTGAGAGAGCCAAACAAGAAGTCAAGGATTTGGCTTGGAACTTTC 240
|||||||| ||||| || ||||| ||||||||||| ||||||||||||| ||||| ||
Sbjct 299 AAGTGGGTTTGTGAGGTTAGAGAACCAAACAAGAAAACAAGGATTTGGCTCGGAACATTT 358
Query 241 CAAACCGCAGAGATGGCAGCTCGTGCTCACGATGTCGCCGCATTAGCCCTCCGCGGCAGA 300
|||||||| |||||||||||||| |||||||| || ||||| |||||||| || ||| ||
Sbjct 359 CAAACCGCTGAGATGGCAGCTCGAGCTCACGACGTTGCCGCTTTAGCCCTTCGTGGCCGA 418
Query 301 TCAGCCTGTCTCAATTTTGCTGACTCGGCTTGGCGGCTACGAATCCCCGAATCAACAAGC 360
||||||||||||||||| ||||||||||||||| | || |||||||| |||||||| ||
Sbjct 419 TCAGCCTGTCTCAATTTCGCTGACTCGGCTTGGAGACTCCGAATCCCGGAATCAACTTGC 478
Query 361 GCCAAAGATATCCAGAAAGCTGCGGCTGAAGCGGCGTTGGCTTTCCAAGATGAGAGGTGT 420
|| || || ||||| || || ||||||||||| |||||||| || || ||||||| ||||
Sbjct 479 GCTAAGGACATCCAAAAGGCGGCGGCTGAAGCTGCGTTGGCGTTTCAGGATGAGATGTGT 538
Query 421 GATACGACCAATGATCATGGCCTGGACATGGAGGAGACGATGGTGGAAGCTATTTATACG 480
||| |||| | ||||||||| | ||||||||||||||| ||||||| |||||||| |||
Sbjct 539 GATGCGACGACGGATCATGGCTTCGACATGGAGGAGACGTTGGTGGAGGCTATTTACACG 598
Query 481 CCGGAACAGAGCGAAGATGCGTTTTATATGGATGAGGAGACGATGATTGGGATGCCGAGT 540
|||||||||||||| |||||||||||||| | || ||| ||||| ||| ||||||||||
Sbjct 599 GCGGAACAGAGCGAAAATGCGTTTTATATGCACGATGAGGCGATGTTTGAGATGCCGAGT 658
Query 541 TTGTTGGATAATATGGCCCAAGGAATGCTCTTGCCGCCGCCGTCCGTTCAATGGAACTAT 600
||||||| ||||||||| |||| ||||| ||||||| |||||||| || ||||| ||
Sbjct 659 TTGTTGGCTAATATGGCAGAAGGGATGCTTTTGCCGCTTCCGTCCGTACAGTGGAATCAT 718
Query 601 AATTACGACGGCGA-GG-GA-GATGGTGACGTGTCGTTGTGGAGTTTTTAA 648
||| | || | ||| || || |||| ||||| ||||| ||||||| ||||
Sbjct 719 AATCATGAAGTCGACGGCGATGATGACGACGTATCGTTATGGAGTTATTAA 769
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39763146948
Database: TAIR10_cdna_20101214_updated
Posted date: Sep 24, 2014 7:52 PM
Number of letters in database: 64,867,051
Number of sequences in database: 41,671
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5