BLASTN 2.2.29+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20101214_updated 41,671 sequences; 64,867,051 total letters Query= CBF2_halleri Length=642 Score E Sequences producing significant alignments: (Bits) Value AT4G25470.1 | Symbols: CBF2, DREB1C, FTQ4, ATCBF2 | C-repeat/DR... 804 0.0 AT4G25490.1 | Symbols: CBF1, DREB1B, ATCBF1 | C-repeat/DRE bind... 717 0.0 AT4G25480.1 | Symbols: DREB1A, CBF3, ATCBF3 | dehydration respo... 632 1e-180 > AT4G25470.1 | Symbols: CBF2, DREB1C, FTQ4, ATCBF2 | C-repeat/DRE binding factor 2 | chr4:13015277-13016220 REVERSE LENGTH=944 Length=944 Score = 804 bits (435), Expect = 0.0 Identities = 579/647 (89%), Gaps = 16/647 (2%) Strand=Plus/Plus Query 10 TCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGACTACGAG---------TCCTCAGGC 60 ||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 141 TCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTCCGGTTTCCTCAGGC 200 Query 61 GGCGATTATATTCCGA-CATTGGCGACAAGCTGTCCCAAGAAACCTGCCGGAAGGAAGAA 119 || ||||| | ||||| || || || ||||| ||||||||||| || ||||||||||| Sbjct 201 GGTGATTACAGTCCGAAGCTT-GCCACGAGCTGCCCCAAGAAACCAGCGGGAAGGAAGAA 259 Query 120 GTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCTAAGAAACTCCGGTAAGTG 179 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 260 GTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGTAAGTG 319 Query 180 GGTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTGGGGACTTTCCAAAC 239 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 320 GGTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTCGGGACTTTCCAAAC 379 Query 240 CGCTGAGATGGCCGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAGATCAGC 299 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 380 CGCTGAGATGGCAGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAGATCTGC 439 Query 300 CTGTCTCAATTTCGCTGACTCGGCTTGGAGGCTACGAATCCCCGAGTCAACGTGCGCCAA 359 |||||||||||||||||||||||||||| ||||||||||||| || ||||| || ||||| Sbjct 440 CTGTCTCAATTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAATCAACCTGTGCCAA 499 Query 360 GGAAATCCAAAAGGCAGCGGCTGAAGCCGCGATGGCTTTTCAATATGAGATGTGTGATAC 419 ||||||||||||||| ||||||||||||||| || ||||||| ||||||||||| ||| Sbjct 500 GGAAATCCAAAAGGCGGCGGCTGAAGCCGCGTTGAATTTTCAAGATGAGATGTGTCATAT 559 Query 420 GACGACGACGGATCATGGCCTTGACATGGAAGAGACGATGGTGGAAGCTATTGTA-ACGC 478 ||||||| | |||||| ||||||||||| ||||| ||||||| |||||| || |||| Sbjct 560 GACGACGGATGCTCATGGTCTTGACATGGAGGAGACCTTGGTGGAGGCTATT-TATACGC 618 Query 479 CGGAACAGAGC---GACGCTTTTTATTTAGACGACGAGGCGATATTCGGGATGTCTAGTT 535 ||||||||||| || || |||||| | || || |||||||| || ||||||||||||| Sbjct 619 CGGAACAGAGCCAAGATGCGTTTTATATGGATGAAGAGGCGATGTTGGGGATGTCTAGTT 678 Query 536 TGTTGGATAATATGGCCGAAGGAATGCTCTTGCCGCCGCCGTCCGTTCAATGGAACTATA 595 |||||||||| ||||||||||| ||||| || ||| ||||||| |||||||||||||||| Sbjct 679 TGTTGGATAACATGGCCGAAGGGATGCTTTTACCGTCGCCGTCGGTTCAATGGAACTATA 738 Query 596 ATTTTGATGTCGAGGGAGATGATGACGTGTCGTTATGGAGTTATTAA 642 ||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 739 ATTTTGATGTCGAGGGAGATGATGACGTGTCCTTATGGAGCTATTAA 785 > AT4G25490.1 | Symbols: CBF1, DREB1B, ATCBF1 | C-repeat/DRE binding factor 1 | chr4:13021780-13022725 REVERSE LENGTH=946 Length=946 Score = 717 bits (388), Expect = 0.0 Identities = 556/638 (87%), Gaps = 7/638 (1%) Strand=Plus/Plus Query 10 TCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGACTACGAGTCCTC-AGGCGGCGATTA 68 |||||||| || ||||||||||||||||||||||| |||||| |||| |||||| ||||| Sbjct 170 TCATTTTCAGCTTTTTCTGAAATGTTTGGCTCCGATTACGAG-CCTCAAGGCGGAGATTA 228 Query 69 TATTCCGACATTGGCGACAAGCTGTCCCAAGAAACCTGCCGGAAGGAAGAAGTTTCGTGA 128 | |||||| ||||| || || ||||| |||||||| || || | |||||||||||||| Sbjct 229 TTGTCCGACGTTGGCCACGAGTTGTCCGAAGAAACCGGCGGGCCGTAAGAAGTTTCGTGA 288 Query 129 GACTCGTCACCCAATTTACAGAGGAGTTCGTCTAAGAAACTCCGGTAAGTGGGTGTGTGA 188 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| Sbjct 289 GACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGTAAGTGGGTTTCTGA 348 Query 189 GTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTGGGGACTTTCCAAACCGCTGAGAT 248 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 349 AGTGAGAGAGCCAAACAAGAAAACCAGGATTTGGCTCGGGACTTTCCAAACCGCTGAGAT 408 Query 249 GGCCGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAGATCAGCCTGTCTCAA 308 ||| |||||||||||||||||||| || |||| ||||||||| ||||||| |||||||| Sbjct 409 GGCAGCTCGTGCTCACGACGTCGCTGCATTAGCCCTCCGTGGCCGATCAGCATGTCTCAA 468 Query 309 TTTCGCTGACTCGGCTTGGAGGCTACGAATCCCCGAGTCAACGTGCGCCAAGGAAATCCA 368 |||||||||||||||||| ||||||||||||| |||||||| ||||||||||| ||||| Sbjct 469 CTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAGTCAACATGCGCCAAGGATATCCA 528 Query 369 AAAGGCAGCGGCTGAAGCCGCGATGGCTTTTCAATATGAGATGTGTGATACGACGACGAC 428 ||| || || |||||||| ||| ||||||||||| |||||| ||||||||||||||| || Sbjct 529 AAAAGCGGCTGCTGAAGCGGCGTTGGCTTTTCAAGATGAGACGTGTGATACGACGACCAC 588 Query 429 GGATCATGGCCTTGACATGGAAGAGACGATGGTGGAAGCTATTGTA-ACGCCGGAACAGA 487 | |||||||||| |||||||| ||||||||||||||||||||| || || |||||||||| Sbjct 589 GAATCATGGCCTGGACATGGAGGAGACGATGGTGGAAGCTATT-TATACACCGGAACAGA 647 Query 488 GCGACGCT---TTTTATTTAGACGACGAGGCGATATTCGGGATGTCTAGTTTGTTGGATA 544 |||| | | |||||| | || || ||| | || || |||||| | | ||||||||||| Sbjct 648 GCGAAGGTGCGTTTTATATGGATGAGGAGACAATGTTTGGGATGCCGACTTTGTTGGATA 707 Query 545 ATATGGCCGAAGGAATGCTCTTGCCGCCGCCGTCCGTTCAATGGAACTATAATTTTGATG 604 ||||||| ||||| ||||| || ||||||||||| ||||||||||| |||||| ||| | Sbjct 708 ATATGGCTGAAGGCATGCTTTTACCGCCGCCGTCTGTTCAATGGAATCATAATTATGACG 767 Query 605 TCGAGGGAGATGATGACGTGTCGTTATGGAGTTATTAA 642 ||| ||||||| |||||||||| | |||||||| ||| Sbjct 768 GCGAAGGAGATGGTGACGTGTCGCTTTGGAGTTACTAA 805 > AT4G25480.1 | Symbols: DREB1A, CBF3, ATCBF3 | dehydration response element B1A | chr4:13018214-13019121 REVERSE LENGTH=908 Length=908 Score = 632 bits (342), Expect = 1e-180 Identities = 550/649 (85%), Gaps = 20/649 (3%) Strand=Plus/Plus Query 10 TCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGACTACGAG---------TCCTCAGGC 60 ||||||||||| ||||||||||||||||||||||| |||||| ||||||||| Sbjct 125 TCATTTTCTGCTTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTTCGGTTTCCTCAGGC 184 Query 61 GGCGATTATATTCCGACATTGGCGACAAGCTGTCCCAAGAAACCTGCCGGAAGGAAGAAG 120 || |||||||||||||| | |||| ||||| ||||||||||| || || | |||||| Sbjct 185 GGTGATTATATTCCGACGCTTGCGAGCAGCTGCCCCAAGAAACCGGCGGGTCGTAAGAAG 244 Query 121 TTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCTAAGAAACTCCGGTAAGTGG 180 ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 245 TTTCGTGAGACTCGTCACCCAATATACAGAGGAGTTCGTCGGAGAAACTCCGGTAAGTGG 304 Query 181 GTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTGGGGACTTTCCAAACC 240 || |||||| | ||||| |||||||||||||| ||||||||||| || || || |||||| Sbjct 305 GTTTGTGAGGTTAGAGAACCAAACAAGAAAACAAGGATTTGGCTCGGAACATTTCAAACC 364 Query 241 GCTGAGATGGCCGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAGATCAGCC 300 ||||||||||| ||||| ||||||||||| ||||| |||| || |||||| |||||||| Sbjct 365 GCTGAGATGGCAGCTCGAGCTCACGACGTTGCCGCTTTAGCCCTTCGTGGCCGATCAGCC 424 Query 301 TGTCTCAATTTCGCTGACTCGGCTTGGAGGCTACGAATCCCCGAGTCAACGTGCGCCAAG 360 ||||||||||||||||||||||||||||| || |||||||| || ||||| ||||| ||| Sbjct 425 TGTCTCAATTTCGCTGACTCGGCTTGGAGACTCCGAATCCCGGAATCAACTTGCGCTAAG 484 Query 361 GAAATCCAAAAGGCAGCGGCTGAAGCCGCGATGGCTTTTCAATATGAGATGTGTGATACG 420 || ||||||||||| ||||||||||| ||| |||| ||||| |||||||||||||| | Sbjct 485 GACATCCAAAAGGCGGCGGCTGAAGCTGCGTTGGCGTTTCAGGATGAGATGTGTGAT--G 542 Query 421 ACGACGACGGATCATGGCCTTGACATGGAAGAGACGATGGTGGAAGCTATTGTA-ACGCC 479 ||||||||||||||||| | |||||||| |||||| ||||||| |||||| || ||| | Sbjct 543 -CGACGACGGATCATGGCTTCGACATGGAGGAGACGTTGGTGGAGGCTATT-TACACGGC 600 Query 480 GGAACAGAGCGAC---GCTTTTTATTTAGACGACGAGGCGATATTCGGGATGTCTAGTTT 536 |||||||||||| || |||||| | |||| |||||||| || | |||| | ||||| Sbjct 601 GGAACAGAGCGAAAATGCGTTTTATATGCACGATGAGGCGATGTTTGAGATGCCGAGTTT 660 Query 537 GTTGGATAATATGGCCGAAGGAATGCTCTTGCCGCCGCCGTCCGTTCAATGGAACTATAA 596 ||||| ||||||||| ||||| ||||| ||||||| |||||||| || ||||| |||| Sbjct 661 GTTGGCTAATATGGCAGAAGGGATGCTTTTGCCGCTTCCGTCCGTACAGTGGAATCATAA 720 Query 597 TTTTGATGTCGA-GG-GA-GATGATGACGTGTCGTTATGGAGTTATTAA 642 | ||| ||||| || || ||||| ||||| |||||||||||||||||| Sbjct 721 TCATGAAGTCGACGGCGATGATGACGACGTATCGTTATGGAGTTATTAA 769 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39380195292 Database: TAIR10_cdna_20101214_updated Posted date: Sep 24, 2014 7:52 PM Number of letters in database: 64,867,051 Number of sequences in database: 41,671 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5