BLASTN 2.2.29+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20101214_updated
41,671 sequences; 64,867,051 total letters
Query= CBF3_halleri
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
AT4G25480.1 | Symbols: DREB1A, CBF3, ATCBF3 | dehydration respo... 821 0.0
AT4G25470.1 | Symbols: CBF2, DREB1C, FTQ4, ATCBF2 | C-repeat/DR... 798 0.0
AT4G25490.1 | Symbols: CBF1, DREB1B, ATCBF1 | C-repeat/DRE bind... 686 0.0
> AT4G25480.1 | Symbols: DREB1A, CBF3, ATCBF3 | dehydration response
element B1A | chr4:13018214-13019121 REVERSE LENGTH=908
Length=908
Score = 821 bits (444), Expect = 0.0
Identities = 587/656 (89%), Gaps = 9/656 (1%)
Strand=Plus/Plus
Query 1 ATGAGCTCATTTTCTGCTTTCTCTGAAATGTTTGGCTCCGACTACGAGTCTCCGGTTTCC 60
|||| ||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||
Sbjct 119 ATGAACTCATTTTCTGCTTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTTCGGTTTCC 178
Query 61 TCAGGCGGTGATTATAGTCCGACGCTGGCGACGAGCTGCCCCAAGAAACCGGCGGGTCGT 120
|||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||
Sbjct 179 TCAGGCGGTGATTATATTCCGACGCTTGCGAGCAGCTGCCCCAAGAAACCGGCGGGTCGT 238
Query 121 AAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCGGAGAAACTCCGGT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 239 AAGAAGTTTCGTGAGACTCGTCACCCAATATACAGAGGAGTTCGTCGGAGAAACTCCGGT 298
Query 181 AAGTGGGTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTGGGGACTTTC 240
|||||||| |||||| | ||||| |||||||||||||| ||||||||||| || || ||
Sbjct 299 AAGTGGGTTTGTGAGGTTAGAGAACCAAACAAGAAAACAAGGATTTGGCTCGGAACATTT 358
Query 241 CAAACCGCTGAGATGGCCGCTCGTGCTCACGATGTCGCCGCCATAGCCCTCCGTGGCCGA 300
||||||||||||||||| ||||| |||||||| || ||||| ||||||| |||||||||
Sbjct 359 CAAACCGCTGAGATGGCAGCTCGAGCTCACGACGTTGCCGCTTTAGCCCTTCGTGGCCGA 418
Query 301 TCCGCCTGTCTCAATTTCGCTGACTCTGCTTGGCGGCTACGAATCCCGGAATCGACTTGC 360
|| ||||||||||||||||||||||| |||||| | || |||||||||||||| ||||||
Sbjct 419 TCAGCCTGTCTCAATTTCGCTGACTCGGCTTGGAGACTCCGAATCCCGGAATCAACTTGC 478
Query 361 GCCAAGGAAATCCAGAAGGCGGCGGCTGAAGCTGCGTTGGCTTTTCAATATGAGATGTGT 420
|| ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 479 GCTAAGGACATCCAAAAGGCGGCGGCTGAAGCTGCGTTGGCGTTTCAGGATGAGATGTGT 538
Query 421 GATATATACGACAACGGATCATGGCTTCGACATGGAGGAGACGTTAGTGGAGGCTTTTGT 480
||| |||| |||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 539 GATG----CGACGACGGATCATGGCTTCGACATGGAGGAGACGTTGGTGGAGGCTATTTA 594
Query 481 GACGGCGGAACAGAGCGAAGAAT-CGATTTATATAGACGAGGAGGCAATGTTCGGGATGC 539
|||||||||||||||||| ||| || ||||||| |||| ||||| ||||| | |||||
Sbjct 595 CACGGCGGAACAGAGCGAA-AATGCGTTTTATATGCACGATGAGGCGATGTTTGAGATGC 653
Query 540 CAAGTTTGTTGGCTAATATGGCCGAAGGGATGCTTTTGCCGCTGCCGTCAGTACAATGGA 599
| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||
Sbjct 654 CGAGTTTGTTGGCTAATATGGCAGAAGGGATGCTTTTGCCGCTTCCGTCCGTACAGTGGA 713
Query 600 ATCATAATTACGATGTCGACGGCGATGATGACT---TATCGTTATGGAGTTATTAA 652
|||||||| | || |||||||||||||||||| ||||||||||||||||||||
Sbjct 714 ATCATAATCATGAAGTCGACGGCGATGATGACGACGTATCGTTATGGAGTTATTAA 769
> AT4G25470.1 | Symbols: CBF2, DREB1C, FTQ4, ATCBF2 | C-repeat/DRE
binding factor 2 | chr4:13015277-13016220 REVERSE LENGTH=944
Length=944
Score = 798 bits (432), Expect = 0.0
Identities = 581/654 (89%), Gaps = 5/654 (1%)
Strand=Plus/Plus
Query 1 ATGAGCTCATTTTCTGCTTTCTCTGAAATGTTTGGCTCCGACTACGAGTCTCCGGTTTCC 60
|||| |||||||||||| || |||||||||||||||||||| ||||||||||||||||||
Sbjct 135 ATGAACTCATTTTCTGCCTTTTCTGAAATGTTTGGCTCCGATTACGAGTCTCCGGTTTCC 194
Query 61 TCAGGCGGTGATTATAGTCCGACGCTGGCGACGAGCTGCCCCAAGAAACCGGCGGGTCGT 120
|||||||||||||| ||||||| ||| || |||||||||||||||||||| ||||| |
Sbjct 195 TCAGGCGGTGATTACAGTCCGAAGCTTGCCACGAGCTGCCCCAAGAAACCAGCGGGAAGG 254
Query 121 AAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCGGAGAAACTCCGGT 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 255 AAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGT 314
Query 181 AAGTGGGTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTGGGGACTTTC 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 315 AAGTGGGTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTCGGGACTTTC 374
Query 241 CAAACCGCTGAGATGGCCGCTCGTGCTCACGATGTCGCCGCCATAGCCCTCCGTGGCCGA 300
||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 375 CAAACCGCTGAGATGGCAGCTCGTGCTCACGACGTCGCCGCCATAGCTCTCCGTGGCAGA 434
Query 301 TCCGCCTGTCTCAATTTCGCTGACTCTGCTTGGCGGCTACGAATCCCGGAATCGACTTGC 360
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 435 TCTGCCTGTCTCAATTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAATCAACCTGT 494
Query 361 GCCAAGGAAATCCAGAAGGCGGCGGCTGAAGCTGCGTTGGCTTTTCAATATGAGATGTGT 420
|||||||||||||| ||||||||||||||||| |||||| ||||||| |||||||||||
Sbjct 495 GCCAAGGAAATCCAAAAGGCGGCGGCTGAAGCCGCGTTGAATTTTCAAGATGAGATGTGT 554
Query 421 GATATATACGACAACGGATCATGG-CTTCGACATGGAGGAGACGTTAGTGGAGGCT-TTT 478
|||| ||||| | |||||| ||| |||||||||||||| || ||||||||| |||
Sbjct 555 CATATG-ACGACGGATGCTCATGGTCTT-GACATGGAGGAGACCTTGGTGGAGGCTATTT 612
Query 479 GTGACGGCGGAACAGAGCGAAGAATCGATTTATATAGACGAGGAGGCAATGTTCGGGATG 538
| ||| ||||||||||| |||| || ||||||| || || ||||| ||||| ||||||
Sbjct 613 AT-ACGCCGGAACAGAGCCAAGATGCGTTTTATATGGATGAAGAGGCGATGTTGGGGATG 671
Query 539 CCAAGTTTGTTGGCTAATATGGCCGAAGGGATGCTTTTGCCGCTGCCGTCAGTACAATGG 598
| |||||||||| ||| |||||||||||||||||||| ||| |||||| || ||||||
Sbjct 672 TCTAGTTTGTTGGATAACATGGCCGAAGGGATGCTTTTACCGTCGCCGTCGGTTCAATGG 731
Query 599 AATCATAATTACGATGTCGACGGCGATGATGACTTATCGTTATGGAGTTATTAA 652
|| |||||| |||||||| || ||||||||| | || |||||||| ||||||
Sbjct 732 AACTATAATTTTGATGTCGAGGGAGATGATGACGTGTCCTTATGGAGCTATTAA 785
> AT4G25490.1 | Symbols: CBF1, DREB1B, ATCBF1 | C-repeat/DRE binding
factor 1 | chr4:13021780-13022725 REVERSE LENGTH=946
Length=946
Score = 686 bits (371), Expect = 0.0
Identities = 561/653 (86%), Gaps = 12/653 (2%)
Strand=Plus/Plus
Query 1 ATGAGCTCATTTTCTGCTTTCTCTGAAATGTTTGGCTCCGACTACGAGTCTCCGGTTTCC 60
|||| ||||||||| ||||| |||||||||||||||||||| |||||| || | |
Sbjct 164 ATGAACTCATTTTCAGCTTTTTCTGAAATGTTTGGCTCCGATTACGAG---CC----T-C 215
Query 61 TCAGGCGGTGATTATAGTCCGACGCTGGCGACGAGCTGCCCCAAGAAACCGGCGGGTCGT 120
|||||| |||||| |||||||| |||| ||||| || || |||||||||||||| |||
Sbjct 216 -AAGGCGGAGATTATTGTCCGACGTTGGCCACGAGTTGTCCGAAGAAACCGGCGGGCCGT 274
Query 121 AAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCGGAGAAACTCCGGT 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 275 AAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGT 334
Query 181 AAGTGGGTGTGTGAGTTGAGAGAGCCAAACAAGAAAACGAGGATTTGGCTGGGGACTTTC 240
|||||||| | ||| |||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 335 AAGTGGGTTTCTGAAGTGAGAGAGCCAAACAAGAAAACCAGGATTTGGCTCGGGACTTTC 394
Query 241 CAAACCGCTGAGATGGCCGCTCGTGCTCACGATGTCGCCGCCATAGCCCTCCGTGGCCGA 300
||||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||
Sbjct 395 CAAACCGCTGAGATGGCAGCTCGTGCTCACGACGTCGCTGCATTAGCCCTCCGTGGCCGA 454
Query 301 TCCGCCTGTCTCAATTTCGCTGACTCTGCTTGGCGGCTACGAATCCCGGAATCGACTTGC 360
|| || |||||||| ||||||||||| ||||||||||||||||||||||| || || |||
Sbjct 455 TCAGCATGTCTCAACTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAGTCAACATGC 514
Query 361 GCCAAGGAAATCCAGAAGGCGGCGGCTGAAGCTGCGTTGGCTTTTCAATATGAGATGTGT 420
|||||||| ||||| || ||||| |||||||| ||||||||||||||| |||||| ||||
Sbjct 515 GCCAAGGATATCCAAAAAGCGGCTGCTGAAGCGGCGTTGGCTTTTCAAGATGAGACGTGT 574
Query 421 GATATATACGACAACGGATCATGGCTTCGACATGGAGGAGACGTTAGTGGAGGCT-TTTG 479
|||| ||||| ||| |||||||| | ||||||||||||||| | ||||| ||| |||
Sbjct 575 GATACG-ACGACCACGAATCATGGCCTGGACATGGAGGAGACGATGGTGGAAGCTATTTA 633
Query 480 TGACGGCGGAACAGAGCGAAGAATCGATTTATATAGACGAGGAGGCAATGTTCGGGATGC 539
| || ||||||||||||||| || ||||||| || |||||| ||||||| |||||||
Sbjct 634 T-ACACCGGAACAGAGCGAAGGTGCGTTTTATATGGATGAGGAGACAATGTTTGGGATGC 692
Query 540 CAAGTTTGTTGGCTAATATGGCCGAAGGGATGCTTTTGCCGCTGCCGTCAGTACAATGGA 599
| | |||||||| ||||||||| ||||| |||||||| |||| |||||| || |||||||
Sbjct 693 CGACTTTGTTGGATAATATGGCTGAAGGCATGCTTTTACCGCCGCCGTCTGTTCAATGGA 752
Query 600 ATCATAATTACGATGTCGACGGCGATGATGACTTATCGTTATGGAGTTATTAA 652
|||||||||| || | ||| || |||| |||| | ||| | |||||||| |||
Sbjct 753 ATCATAATTATGACGGCGAAGGAGATGGTGACGTGTCGCTTTGGAGTTACTAA 805
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40018448052
Database: TAIR10_cdna_20101214_updated
Posted date: Sep 24, 2014 7:52 PM
Number of letters in database: 64,867,051
Number of sequences in database: 41,671
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5