BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01060.1
Length=2704
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470177 jgi|Araly1|470177|fgenesh2_kg.1__131__AT1G01060.3 3301 0.0
> Ahg470177 jgi|Araly1|470177|fgenesh2_kg.1__131__AT1G01060.3
Length=2366
Score = 3301 bits (1787), Expect = 0.0
Identities = 2093/2236 (94%), Gaps = 40/2236 (2%)
Strand=Plus/Plus
Query 157 tttttttgttttGCTTCCGATTTGATTATTTCCGGGAACGATGACTTCTCCGGGGAGTTC 216
||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 2 TTTTTTT-TTTTGCTTCCGATTTGATTATTTCCGGGAACAATGACTTCTCCGGCTAGTTC 60
Query 217 CCGGTGAGATGATAAGTCAGATTGCATACTT-GTCTCCTCCATGGCTACTCTCAAGGGTT 275
|| |||||||||| | || ||||||| || || |||||||||||||||||||||||||
Sbjct 61 CCAGTGAGATGAT--CT-AGTTTGCATATTTGGT-TCCTCCATGGCTACTCTCAAGGGTT 116
Query 276 TTGGCTGCGGTGGATTCGTTTGGTTTCTCTAGAATCTAAAGAGGTTATCACAACGGCTTT 335
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 TTGGCTGCGATGGATTCGTTTGGTTTCTCTAGAATCTAAAGAGGTTATCACAACGGCTTT 176
Query 336 GCAATTTGAAAACTTTCATGTTTGGGGAGATCAAAGATGGTTTCTTTTTTATACTTTACT 395
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 177 GCAATTTGGAAACTTTCATGTTTGGGGAGATCAAAGATGGTTTCTTTATTATATTTTACT 236
Query 396 TGTTAGAGAGGATTTGAAGCAGCGAATAGCTGCACCGGTCCTGTTATGGATACTAATACA 455
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 237 TGTTAGAGAGGATTTGAAGCAGCGAATAGCTGCAACGGTCCTGTTATGGATACTAATACA 296
Query 456 TCTGGAGAAGAATTATTAGCTAAGGCAAGAAAGCCATATACAATAACAAAGCAGCGAGAG 515
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 297 TCTGGAGAAGAATTATTAGCTAAGGCAAGAAAGCCGTATACAATAACAAAGCAGCGAGAG 356
Query 516 CGATGGACTGAGGATGAGCATGAGAGGTTTCTAGAAGCCTTGAGGCTTTATGGAAGAGCT 575
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CGATGGACAGATGATGAGCATGAGAGGTTTCTAGAAGCCTTGAGGCTTTATGGAAGAGCT 416
Query 576 TGGCAACGAATTGAAGAACATATTGGGACAAAGACTGCTGTTCAGATCAGAAGTCATGCA 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 TGGCAACGAATTGAAGAACATATTGGGACAAAGACTGCTGTTCAGATCAGAAGTCATGCA 476
Query 636 CAAAAGTTCTTCACAAAGTTGGAGAAAGAGGCTGAAGTTAAAGGCATCCCTGTTTGCCAA 695
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 477 CAAAAGTTCTTCACAAAGTTGGAGAAAGAGGCTGAAGCTAAAGGCATCCCTGTTTGCCAA 536
Query 696 GCTTTGGACATAGAAATTCCGCCTCCTCGTCCTAAACGAAAACCCAATACTCCTTATCCT 755
||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 537 GCTTTGGACATGGAAATCCCACCTCCTCGTCCTAAACGGAAACCCAATACTCCTTATCCT 596
Query 756 CGAAAGCCTGGGAACAACGGTACATCTTCCTCTCAAGTATCATCAGCAAAAGATGCAAAA 815
||||| | |||||| |||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 597 CGAAAACATGGGAATAACGGTACATCTTCGTCACAAATATCATCAGCAAAAGATGCAAAA 656
Query 816 CTTGTTTCATCGGCCTCTTCTTCACAGTTGAATCAGGCGTTCTTGGATTTGGAAAAAATG 875
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 657 CTTGTTTCGTCGGCCTCTTCTTCACAGTTTAATCAGTCGTTCTTGGATTTGGAAAAAATG 716
Query 876 CCGTTCTCTGAGAAAACATCAACTGGAAAAGAAAATCAAGATGAGAATTGCTCGGGTGTT 935
||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 717 CCGTTTTCTGAGAATACATCAACTGGAAAAGAAAATCAAGATGATAATTGCTCGGGTGTT 776
Query 936 TCTACTGTGAACAAGTATCCCTTACCAACGAAACAGGTAAGTGGCGACATTGAAACAAGT 995
|||||||||||||||||||||||||||| |||| ||||||||| ||| ||||||||||||
Sbjct 777 TCTACTGTGAACAAGTATCCCTTACCAAAGAAAAAGGTAAGTGCCGATATTGAAACAAGT 836
Query 996 AAGACCTCAACTGTGGACAACGCGGTTCAAGATGTTCCCAAGAAGAACAAAGACAAAGAT 1055
||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 837 AAGACCTCAACCGTGGACAACGCGGTTCAAGATGCTCCCAAGAAGAACAAACACAAAGAT 896
Query 1056 GGTAACGATGGTACTACTGTGCACAGCATGCAAAACTACCCTTGGCATTTCCACGCAGAT 1115
||||||||||||||| | | |||||| |||||||||||||||||||||||||||| | |
Sbjct 897 GGTAACGATGGTACTG-T-T-CACAGCGTGCAAAACTACCCTTGGCATTTCCACGCGGGT 953
Query 1116 ATTGTGAACGGGAATATAGCAAAATGCCCTCAAAATCATCCCTCAGGTATGGTATCTCAA 1175
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 954 ATTGTGAACGGGAATATAGCAAAATGCCCTCAAAATCATCCCTTAGGTATGGTATCTCAA 1013
Query 1176 GACTTCATGTTTCATCCTATGAGAGAAGAAACTCACGGGCACGCAAATCTTCAAGCTACA 1235
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1014 GACTTCATGTTTCATCCTATGAGAGAAGAAAGTCACGGGCACGCAAATCTTCAAGCTACA 1073
Query 1236 ACAGCATCTGCTACTACTACAGCTTCTCATCAAGCGTTTCCAGCTTGTCATTCACAGGAT 1295
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1074 ACAGCATCTGCTAC-A-----GCTTCTCATCAAGCGTTTCCAGCTTGTCATTCACAGGAT 1127
Query 1296 GATTACCGTTCGTTTCTCCAGATATCATCTACTTTCTCCAATCTTATTATGTCAACTCTC 1355
||||||| ||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1128 GATTACCATTCGTTTCTACAGATGTCTTCTACTTTCTCCAATCTTATTATGTCAACTCTC 1187
Query 1356 CTACAGAATCCTGCAGCTCATGCTGCAGCTACATTCGCTGCTTCGGTCTGGCCTTATGCG 1415
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1188 CTACAGAATCCTGCTGCTCATGCTGCAGCTACATTTACTGCTTCGGTCTGGCCTTATGCG 1247
Query 1416 AGTGTCGGGAATTCTGGTGATTCATCAACCCCAATGAGCTCTTCTCCTCCAAGTATAACT 1475
| ||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 1248 AATGTTGGGAATTCTGGAGATTCGTCAACCCCAGTGAGCTCTTCTCCTCCAAGTATAGCT 1307
Query 1476 GCCATTGCCGCTGCTACAGTAGCTGCTGCAACTGCTTGGTGGGCTTCTCATGGACTTCTT 1535
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 GCCATTGCAGCTGCTACAGTAGCTGCTGCAACTGCTTGGTGGGCTTCTCATGGACTTCTT 1367
Query 1536 CCTGTATGCGCTCCAGCTCCAATAACATGTGTTCCATTCTCAACTGTTGCAGTTCCAACT 1595
|||||||| |||||||||||||| |||||||||||||| | | || | ||
Sbjct 1368 CCTGTATGTGCTCCAGCTCCAATTACATGTGTTCCATT---A-C-----CA-----A-CT 1412
Query 1596 CCAGCAATGACTGAAATGGATACCGTTGAAAATACTCAAC--C-GTTTGAGAAACAAAAC 1652
|||||||||||||| |||||||||||||||||| |||||| | | ||||||||||||||
Sbjct 1413 CCAGCAATGACTGAGATGGATACCGTTGAAAATGCTCAACTACCGCTTGAGAAACAAAAC 1472
Query 1653 ACAGCTCTGCAAGATCAAAACTTGGCTTCGAAATCTCCAGCTTCATCATCTGATGATTCA 1712
||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||
Sbjct 1473 ACAGCTCTGCAAGATCAAAACGTGGCTTCAAAATCTCCAGCTTCATCATCCGATGATTCA 1532
Query 1713 GATGAGACTGGAGTAACCAAGCTAAATGCCGACTCAAAAACC-AATGATGATAAAATTGA 1771
|| |||||||||||||||||| |||||| ||||||||||||| || | |||||| |||
Sbjct 1533 GAGGAGACTGGAGTAACCAAGATAAATGTCGACTCAAAAACCCAAGG-TGATAAGGTTGG 1591
Query 1772 GGAGGTTGTTGTTACTGCCGCTGTGCATGACTCAAACACTGCCCAGAAGAAAAATCTTGT 1831
||||||||||||| |||| ||||||||||| ||||||||| |||||||||||||| | ||
Sbjct 1592 GGAGGTTGTTGTTGCTGCTGCTGTGCATGATTCAAACACTACCCAGAAGAAAAATATGGT 1651
Query 1832 GGACCGCTCATCCTGTGGCTCAAATACACCTTCAGGGAGTGACGCAGAAACTGATGCATT 1891
||| || ||||| ||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 1652 GGATCGGTCATCGTGTGGCTCAAACACACCTTCAGGGAGTGACGCGGAAACAGATGCATT 1711
Query 1892 AGATAAAATGGAGAAAGATAAAGAGGATGTGAAGGAGACAGATGAGAATCAGCCAGATGT 1951
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1712 AGATAAATTGGAGAAAGATAAAGAGGATGTGAAGGAGACAGATGAAAATCAGCCAGATGT 1771
Query 1952 TATTGAGTTAAATAACCGTAAGATTAAAATGAGAGACAACAACAGCAACAACAATG-C-- 2008
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1772 TATTGAGTTAAATAACCGTAAGATTAAAATGAGAGACAACAACAACAACAACAACAACCC 1831
Query 2009 AACTACTGATTCGTGGAAGGAAGTCTCCGAAGAGGGTCGTATAGCGTTTCAGGCTCTCTT 2068
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1832 AACTACTGATTCATGGAAGGAAGTCTCCGAAGAGGGTCGTATAGCGTTTCAGGCTCTCTT 1891
Query 2069 TGCAAGAGAAAGATTGCCTCAAAGCTTTTCGCCTCCTCAAGTGGCAGAGAATGTGAATAG 2128
||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1892 TGCAAGAGAAAAATTGCCTCAAAGCTTTTCACCTCGTCAAGTGGCAGAGAATGTGAATAG 1951
Query 2129 AAAACAAAGTGACAC-GTCAATGCCATTGGCTCCTAATTTCAAAAGCCAGGATTCTTGTG 2187
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 1952 AAAACAAAGTGACACAGCCA-TGCCATTGGCTCCTAATTTCAAAAGCCAGGATTCTTGTG 2010
Query 2188 CTGCAGACCAAGAAGGAGTAGTAATGATCGGTGTTGGAACATGCAAGAGTCTTAAAACGA 2247
|||||||||||||| |||||| |||||||||||||||| || ||||||||||||||||||
Sbjct 2011 CTGCAGACCAAGAAAGAGTAGCAATGATCGGTGTTGGACCAGGCAAGAGTCTTAAAACGA 2070
Query 2248 GACAGACAGGATTTAAGCCATACAAGAGATGTTCAATGGAAGTGAAAGAGAGCCAAGTTG 2307
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2071 GACAGACAGGGTTTAAGCCATACAAGAGATGTTCAATGGAACTGAAAGAGAGCCAAGTTG 2130
Query 2308 GGAACATAAACAATCAAAGTGATGAAAAAGTCTGCAAAAGGCTTCGATTGGAAGGAGAAG 2367
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2131 GGAACACAAACAATCAAAGTGATGAAAAAGTCTGCAAAAGGCTTCGATTGGAAGGAGAAG 2190
Query 2368 CTTCTACATGACAGAC 2383
||||||||||||||||
Sbjct 2191 CTTCTACATGACAGAC 2206
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102005676110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5