BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01080.2
Length=1322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909871 jgi|Araly1|909871|Al_scaffold_0001_125 1308 0.0
> Ahg909871 jgi|Araly1|909871|Al_scaffold_0001_125
Length=897
Score = 1308 bits (708), Expect = 0.0
Identities = 843/904 (93%), Gaps = 26/904 (3%)
Strand=Plus/Plus
Query 231 ATGGCGGCCTCCTGCTTCGCAATTCCCTTATCTTCTTCTTCTCGATCGTCTCACAATGCA 290
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGGCGGCCTCTTGCTTCGCAATTCCCTTATCTTCTTCTTCTCGATCATCTCACAATGCC 60
Query 291 ATTCCCAAATACAAAACCCTAAtctcttcttcttcttactcttacttagaatctctgaaa 350
|||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||
Sbjct 61 ATTCCCAAATACAAAACCCTAA--TC-TCTTCTTCTTACGCTTACTTAGAATCTCTGAAA 117
Query 351 cttcaattctcttcttccaattcttttcatcactcttctctttctcGTCCCTTTGTAGCT 410
| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 118 CCTCAATTCTCTTCTTCCAATTCTTTTCACCTCTCTTCTCTTTCTCGTCCCTTTGTAGCT 177
Query 411 CAACC-ACTTCAAATCAAGGTCTCTTCTTCAGAATTATCAGTTCTCGAT---GAAG-A-A 464
| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 178 C-ACCAACTTCAAATCAAGGTCTCTTCTTCAGAATTATCAGTTCTCGATGAAGAAGAAGA 236
Query 465 A-AAGAAG----A--AG-A--AGTAGT-TAAA--GGAGAAGCAGAACCCAATAAAGATAG 511
| |||||| | || | || ||| ||| ||||||| |||| ||||| ||||||
Sbjct 237 AGAAGAAGTTAAAGGAGAAGGAGAAGTGAAAACTGGAGAAGGAGAAACCAATGGAGATAG 296
Query 512 TGTCGTCTCCAAAGCAGAACCAGTAAAGAAACCGAGACCTTGCGAGCTCTACGTGTGTAA 571
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGTCGTCTCGGAAGCAGAACCAGTAAAGAAACCGAGACCTTGCGAGCTCTACGTGTGTAA 356
Query 572 TATCCCTAGAAGCTACGACATTGCTCAGCTTCTTGACATGTTTCAGCCTTTTGGAACTGT 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 TATCCCTAGAAGCTACGACATTGCTCAGCTTCTTGACATGTTTCAGCCTTTTGGAACTGT 416
Query 632 AATCTCTGTAGAGGTGGTATCGCGAAATCCTCAGACGGGAGAGAGCCGTGGAAGCGGGTA 691
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 417 AATCTCTGTTGAGGT---ATCGCGAAATCCTCAGACGGGAGAGAGCCGTGGAAGCGGATA 473
Query 692 CGTGACAATGGGTTCTATAAACTCTGCCAAAATCGCCATTGCTTCTCTTGATGGAACAGA 751
||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 474 CGTCACAATGGGTTCTATAAACTCTGCCAAAATCGCAATTGCTTCGCTTGATGGAACAGA 533
Query 752 AGTAGGTGGTCGGGAAATGCGGGTTAGGTACTCTGTTGACATGAATCCAGGAACAAGAAG 811
||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 534 AGTAGGTGGTCGGGAAATGCGGGTTAGGTACTCCGTTGACATGAATCCAGGAGCCAGAAG 593
Query 812 AAACCCTGAAGTCTTGAACTCAACTCCAAAGAAGATTCTGATGTACGAAAGCCAACACAA 871
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 594 AAACCCTGAAGTCTTGAATTCAACTCCAAAGAAGATTCTGATGTACGAAAGCCAATACAA 653
Query 872 GGTCTATGTCGGAAATCTCCCTTGGTTCACACAGCCTGATGGTTTGAGAAACCACTTTAG 931
||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 654 GGTTTATGTCGGAAACCTCCCTTGGTTCACACAGCCTGATGGTTTGAGAGACCACTTCAG 713
Query 932 CAAGTTTGGCACAATCGTAAGCACGAGAGTGTTACATGATCGTAAGACCGGGAGAAACAG 991
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 714 CAAGTTTGGCACAATCGTAAGCACGAGAGTGTTACATGATCGTAAGACCGGGAAAAACAG 773
Query 992 AGTCTTTGCCTTTCTTTCTTTTACAAGCGGTGAAGAACGTGATGCGGCTTTATCATTCAA 1051
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 774 AGTCTTTGCCTTTCTTTCTTTTACAAACAGTGAAGAACGTGATGCGGCTTTATCATTGAA 833
Query 1052 TGGAACACAATATGAAGGTCGCAGAATCATCGTCAGAGAAGGTATCGAGAAGAGTGAGTC 1111
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 834 TGGAACACAATATGAAGGTCGCAGAATCATCGTCAGAGAAGGTATAGAGAAGAGTGAGGC 893
Query 1112 GTAA 1115
||||
Sbjct 894 GTAA 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49445423349
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5