BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01120.1
Length=1899
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918858 jgi|Araly1|918858|scaffold_100139.1 2710 0.0
Ahg356713 jgi|Araly1|356713|fgenesh1_pg.C_scaffold_8000500 283 3e-75
> Ahg918858 jgi|Araly1|918858|scaffold_100139.1
Length=1628
Score = 2710 bits (1467), Expect = 0.0
Identities = 1574/1627 (97%), Gaps = 2/1627 (0%)
Strand=Plus/Plus
Query 169 TTTCGACCCAAAACTATACTGATGGAGAGAACAAACAGCATTGAGATGGATCGAGAGAGA 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTCGACCCAAAACTATACTGATGGAGAGAACAAACAGCATTGAGATGGATCGAGAGAGA 60
Query 229 TTAACGGCGGAGATGGCGTTTCGAGATTCATCATCGGCCGTTATAAGAATTCGAAGACGT 288
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 61 TTAACGGCGGAGATGGCGTTTCGAGATTCATCATCGGCCGTCATAAGAATCCGGAGACGT 120
Query 289 TTGCCGGATTTATTAACGTCCGTTAAGCTCAAATACGTGAAGCTTGGACTTCACAACTCT 348
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TTGCCGGATTTGTTAACGTCCGTTAAGCTCAAATACGTGAAGCTTGGTCTTCACAACTCT 180
Query 349 TGCAACGTGACCACCATTCTCTTC-TTCTTAATTATTCTTCCTTTAACCGGAACCGTGCT 407
|||||| | ||||||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 181 TGCAACCTCACCACCATTCTCTTCTTTC-TAATTATTCTTCCCTTAACCGGAACCGTGCT 239
Query 408 GGTTCAGCTAACCGGTCTAACGTTCGATACGTTCTCTGAGCTTTGGTCTAACCAGGCGGT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGTTCAGCTAACCGGTCTAACGTTCGATACGTTCTCTGAGCTTTGGTCTAACCAGGCGGT 299
Query 468 TCAACTCGACACGGCGACGAGACTTACCTGCTTGGTTTTCCTCTCCTTCGTTTTGACCCT 527
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 300 TCAACTCGACACGGCGACGAGACTCACCTGCTTGGTTTTCCTCTGCTTCGTTTTGACCCT 359
Query 528 CTACGTGGCTAACCGGTCTAAACCGGTTTACCTAGTGGATTTCTCCTGCTACAAACCGGA 587
||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 CTACGTGGCCAACCGGACTAAACCGGTTTACCTAGTGGATTTCTCTTGCTACAAACCGGA 419
Query 588 AGACGAGCGTAAAATATCAGTAGATTCGTTCTTGACGATGACTGAGGAAAATGGATCATT 647
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct 420 AGACGAGCGTAAAATATCGGTAGATTCGTTCTTGACGATGACGGAGGAAAATGGATCGTT 479
Query 648 CACCGATGACACGGTTCAGTTCCAGCAAAGAATCTCGAACCGGGCCGGTTTGGGAGACGA 707
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 CACCGATGACACGGTTCAGTTCCAGCAAAGAATCTCGAACCGGGCCGGTTTAGGAGACGA 539
Query 708 GACGTATCTGCCACGTGGCATAACTTCAACGCCCCCGAAGCTAAATATGTCAGAGGCACG 767
||| ||||| ||||||||||| || |||| |||||||||||||||||||||||||||||
Sbjct 540 GACTTATCTACCACGTGGCATCACCTCAAAACCCCCGAAGCTAAATATGTCAGAGGCACG 599
Query 768 TGCCGAAGCTGAAGCCGTTATGTTTGGAGCCTTAGATTCCCTCTTCGAGAAAACCGGAAT 827
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 600 TGCCGAAGCTGAAGCCGTTATGTTCGGAGCCTTAGATTCCCTCTTCGAGAAAACCGGAAT 659
Query 828 TAAACCGGCCGAAGTCGGAATCTTGATAGTAAACTGCAGCTTATTCAATCCGACGCCGTC 887
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TAAACCGGCCGAAGTTGGAATCTTGATAGTAAACTGCAGCTTATTCAATCCGACGCCGTC 719
Query 888 TCTATCAGCGATGATCGTGAACCATTACAAGATGAGAGAAGACATCAAAAGTTACAACCT 947
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 720 TCTATCAGCGATGATCGTGAACCATTACAAGATGAGAGAAGACATCAAAAGCTACAACCT 779
Query 948 CGGAGGAATGGGTTGCTCCGCCGGATTAATCTCAATCGATCTCGCTAACAATCTCCTCAA 1007
|||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 780 CGGAGGAATGGGTTGCTCTGCCGGATTAATCTCAATCGATCTCGCAAACAACCTCCTCAA 839
Query 1008 AGCAAACCCTAATTCTTACGCTGTCGTGGTAAGCACGGAAAACATAACCCTAAACTGGTA 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AGCAAACCCTAATTCTTACGCTGTCGTGGTAAGCACGGAAAACATAACCCTAAACTGGTA 899
Query 1068 CTTCGGAAATGACCGGTCAATGCTCCTCTGCAACTGCATCTTCCGAATGGGCGGAGCTGC 1127
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTTCGGAAATGACCGATCAATGCTCCTCTGCAACTGCATCTTCCGAATGGGCGGAGCTGC 959
Query 1128 GATTCTCCTCTCTAACCGCCGTCAAGACCGGAAGAAGTCAAAGTACTCGCTGGTCAACGT 1187
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 960 GATTCTCCTTTCTAACCGCCGACAAGACCGGAAGAAGTCAAAGTACTCGCTGGTCAACGT 1019
Query 1188 CGTTCGAACACATAAAGGATCAGACGACAAGAACTACAATTGCGTGTACCAGAAGGAAGA 1247
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CGTTCGAACGCATAAAGGATCAGACGACAAGAACTACAATTGCGTGTACCAGAAGGAAGA 1079
Query 1248 CGAGAGAGGAACAATCGGTGTCTCTTTAGCTAGAGAGCTCATGTCTGTCGCCGGAGACGC 1307
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 1080 CGAGAGAGGAACAATCGGTGTCTCTTTAGCTCGAGAGCTCATGTCTGTTGCCGGAGACGC 1139
Query 1308 TCTGAAAACAAACATCACGACTTTAGGACCGATGGTTCTTCCATTGTCAGAGCAGTTGAT 1367
||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 1140 TCTGAAAACAAACATCACGACTTTAGGACCGATGGTTCTCCCATTGTCGGAACAGTTGAT 1199
Query 1368 GTTCTTGATTTCCTTGGTCAAAAGGAAGATGTTCAAGTTAAAAGTTAAACCGTATATTCC 1427
|||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1200 GTTCTTGATTTCATTGGTCAAAAGGAAGATGTTCAAGCTAAAAGTGAAACCGTATATTCC 1259
Query 1428 GGATTTCAAGCTAGCTTTCGAGCATTTCTGTATTCACGCAGGAGGTAGAGCGGTTCTAGA 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GGATTTCAAGCTAGCTTTCGAGCATTTCTGTATTCACGCAGGAGGTAGAGCGGTTCTAGA 1319
Query 1488 CGAAGTGCAGAAGAATCTTGATCTCAAAGATTGGCACATGGAACCTTCTAGAATGACTTT 1547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CGAAGTGCAGAAGAATCTTGATCTCAAAGATTGGCACATGGAACCTTCTAGAATGACTTT 1379
Query 1548 GCACAGATTTGGTAACACTTCGAGTAGCTCGCTTTGGTATGAGATGGCTTATACCGAAGC 1607
|||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1380 GCACCGGTTTGGTAACACTTCGAGTAGCTCGCTTTGGTATGAGATGGCTTATACGGAAGC 1439
Query 1608 TAAGGGTCGGGTTAAAGCTGGTGACCGACTTTGGCAGATTGCGTTTGGATCGGGTTTCAA 1667
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1440 TAAGGGTCGGGTTAAAGCCGGTGATCGACTTTGGCAGATTGCGTTTGGATCGGGTTTCAA 1499
Query 1668 GTGTAATAGTGCGGTTTGGAAAGCGTTACGACCGGTTTCGACGGAGGAGATGACCGGTAA 1727
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1500 GTGTAATAGTGCGGTTTGGAAAGCGTTACGACCAGTTTCGACGGAGGAGATGACTGGTAA 1559
Query 1728 TGCTTGGGCTGGTTCGATTGATCAATATCCGGTTAAAGTTGTGCAATGATTGGTTGAACC 1787
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1560 TGCGTGGGCTGGTTCGATTGATCAATATCCGGTTAAAGTTGTACAATGATTTGTTGAACC 1619
Query 1788 GGATAAT 1794
|||||||
Sbjct 1620 GGATAAT 1626
> Ahg356713 jgi|Araly1|356713|fgenesh1_pg.C_scaffold_8000500
Length=813
Score = 283 bits (153), Expect = 3e-75
Identities = 520/691 (75%), Gaps = 49/691 (7%)
Strand=Plus/Plus
Query 1033 GTGGTAAGCACGGAAAACATAACCCTAAACTGGTACTTCGGAAATGACCGGTCAATGCTC 1092
||||| ||||| || ||||||||||||||||||||||| || || ||||| ||||||||
Sbjct 34 GTGGTGAGCACAGAGAACATAACCCTAAACTGGTACTTAGGCAACGACCGATCAATGCTT 93
Query 1093 CTCTGC-AACTGCATCTTCCGAATGGGCGGAGCTGCGATTCTCCTCTCTAACCGC-CGTC 1150
|||| | |||||||||||||| ||||||||||| ||| | || ||||| |||||| | ||
Sbjct 94 CTCT-CTAACTGCATCTTCCGTATGGGCGGAGCCGCGGTACTTCTCTCGAACCGCTCCTC 152
Query 1151 AAGACCGGAAGAAG-TCAAAGTACTC-GCTGGTCAACGTCGTTCGAACACATAAAGGATC 1208
|| | | || | ||||| || || ||| || || |||||| || || |||||| |
Sbjct 153 -GGATC-GTAGCCGTTCAAAATA-TCAGCTCATCCACACCGTTCGTACCCACAAAGGAGC 209
Query 1209 AGACGACAA-GAACTACAATTGCGTGTA-C--C-AGAAG-GAA-GACG-AG-AG--A--G 1255
|| ||||| | | | | || || || | | ||||| || ||| || || | |
Sbjct 210 TGATGACAACGCA-TTCGGCTGTGTTTACCAACGAGAAGACAACAACGCAGAAGAAACCG 268
Query 1256 G-AACAATCGGTGTCTCTTTAGCTAGAGAGCTCATGTCTGTCGCCGGAGACGCTCTGAAA 1314
| || |||||| || || | ||| | | || ||| | | || ||||| ||||| ||
Sbjct 269 GCAA-AATCGGAGTATCACTCTCTAAAAACCTAATGGCAATAGCTGGAGAAGCTCTCAAG 327
Query 1315 ACAAACATCACGACTTTAGGACCGA-TGGTTCTTCCATTGTCAGAGC-AGTTGATGTTCT 1372
||||||||||| ||| | ||||| | | || || ||| |||| || | | || | || |
Sbjct 328 ACAAACATCACAACTCTCGGACC-ACTAGTCCTACCAATGTCCGAACAACTT-CTCTTTT 385
Query 1373 T-GATTTCCT--TGGTCAAAAGGAAGATGTTC-AAGTTAA-AAGTTAAA-CCGTATATTC 1426
| | ||| ||| | || ||| | ||| |||| || || |||| || || ||||
Sbjct 386 TCGCGACCCTCGTGGCCCGAA--AAG-TCTTCAAAGTCAAGAAAATAAAGCCTTACATTC 442
Query 1427 CGGATTTCAAGCTAGCTTTCGAGCATTTCTGTATTCACGCAGGAGGTAGAGCGGTTCTAG 1486
| |||||||||||||||||||||||||||||||| ||||| ||||||||||| || || |
Sbjct 443 CCGATTTCAAGCTAGCTTTCGAGCATTTCTGTATCCACGCGGGAGGTAGAGCCGTGCTCG 502
Query 1487 ACGA-AGT-GCAGAAGAATCTTG-ATCTCAAA-GATTGGCACATGGAACCTTCTAGAATG 1542
|||| | | | ||||||| |||| || | | || ||||| ||||| || || || |||
Sbjct 503 ACGAGA-TAG-AGAAGAA-CTTGGATTT-ATCCGAATGGCATATGGAGCCATCGAGGATG 558
Query 1543 ACTTTGCACAGATTTGGTAACACTTCGAGTAGCTCGCTTTGGTATGAGATGGCTTATACC 1602
|| ||| || | ||||| ||||||||||||||||| |||||||||||| | || ||||
Sbjct 559 ACGTTGAACCGGTTTGGAAACACTTCGAGTAGCTCACTTTGGTATGAGCTTGCGTATAGT 618
Query 1603 GAAGCTAAGGGTCGGGTTAA-AGCTGGTGACCG-ACTTTGGCAGATTGCGTTTGGATCGG 1660
|||||||| || || |||| || || || | |||| ||||||||||||| |||||||
Sbjct 619 GAAGCTAAAGGAAGGATTAAGAGA-GGAGATAGGACTT-GGCAGATTGCGTTCGGATCGG 676
Query 1661 GTTTCAAGTGTAATAGTGCGGTTTGGAAAGC 1691
|||| |||||||| |||||||||||||||||
Sbjct 677 GTTTTAAGTGTAACAGTGCGGTTTGGAAAGC 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71343028885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5