BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01140.3 Length=1700 Score E Sequences producing significant alignments: (Bits) Value Ahg470161 jgi|Araly1|470161|fgenesh2_kg.1__115__AT1G01140.3 2422 0.0 > Ahg470161 jgi|Araly1|470161|fgenesh2_kg.1__115__AT1G01140.3 Length=1525 Score = 2422 bits (1311), Expect = 0.0 Identities = 1415/1465 (97%), Gaps = 7/1465 (0%) Strand=Plus/Plus Query 104 GAAAAAGAAAATGAGTGGAAGCAGAAGGAA-G-G-CGACGCCGGCGAGTAGGACGCGAGT 160 ||| |||||||||||||| ||||||||||| | | ||||||||||||||||||||||||| Sbjct 1 GAAGAAGAAAATGAGTGGGAGCAGAAGGAAGGCGACGACGCCGGCGAGTAGGACGCGAGT 60 Query 161 AGGGAATTACGAGATGGGACGAACTCTCGGAGAAGGAAGCTTCGCTAAGGTGAAATACGC 220 ||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 61 AGGGAATTATGAGATGGGAAGAACTCTAGGAGAAGGAAGCTTCGCTAAGGTGAAATACGC 120 Query 221 CAAGAACACCGTCACCGGAGATCAAGCCGCTATCAAAATCCTCGACCGAGAAAAGGTCTT 280 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GAGGAACACCGTCACCGGAGATCAAGCCGCTATCAAAATCCTCGACCGAGAAAAGGTCTT 180 Query 281 CCGTCACAAAATGGTCGAACAGCTTAAAAGAGAAATATCTACAATGAAACTGATTAAACA 340 ||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| Sbjct 181 CCGTCACAAAATGGTCGAACAGCTTAAAAGAGAGATATCGACAATGAAATTGATTAAACA 240 Query 341 TCCAAATGTGGTTGAAATCATTGAGGTTATGGCGAGCAAAACGAAGATCTATATCGTTCT 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TCCAAATGTGGTTGAAATCATTGAGGTTATGGCGAGCAAAACGAAGATCTATATCGTTCT 300 Query 401 TGAGCTTGTCAATGGAGGTGAACTCTTTGATAAAATCGCGCAACAAGGGAGGCTTAAGGA 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TGAGCTTGTCAATGGAGGTGAACTCTTTGATAAAATCGCGCAACAAGGGAGGCTTAAGGA 360 Query 461 GGATGAAGCTCGGAGATATTTTCAGCAGCTCATCAATGCTGTGGATTACTGCCACAGTCG 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 GGATGAAGCTCGGAGATATTTTCAGCAGCTCATCAATGCTGTGGATTACTGCCACAGTCG 420 Query 521 AGGTGTCTACCACAGAGATCTCAAGCCTGAAAATCTGATCCTTGACGCAAATGGGGTTTT 580 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 421 AGGTGTCTACCACAGAGATCTCAAGCCTGAAAATCTTATCCTTGATGCAAATGGGGTTTT 480 Query 581 GAAAGTCTCTGATTTTGGGTTAAGCGCCTTCTCACGACAAGTTCGGGAAGATGGTTTGCT 640 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 481 GAAAGTCTCTGATTTTGGGTTAAGCGCGTTCTCACGACAAGTTCGGGAAGATGGTTTGCT 540 Query 641 TCATACAGCTTGTGGAACGCCAAACTACGTTGCCCCTGAGGTTTTGTCGGACAAAGGCTA 700 ||| ||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| Sbjct 541 TCACACAGCTTGTGGAACGCCAAACTACGTTGCTCCTGAGGTTTTATCAGACAAAGGCTA 600 Query 701 TGACGGTGCAGCAGCAGATGTCTGGTCTTGTGGTGTCATTCTCTTTGTGCTTATGGCTGG 760 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 601 TGACGGTGCAGCAGCAGATGTCTGGTCTTGTGGTGTAATTCTCTTTGTGCTCATGGCTGG 660 Query 761 TTACTTGCCTTTTGATGAGCCGAATCTCATGACATTATACAAACGTATATGCAAGGCTGA 820 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 661 TTACTTGCCTTTTGATGAGCCAAATCTCATGACATTATACAAACGTATATGCAAGGCCGA 720 Query 821 GTTTAGCTGCCCACCATGGTTCTCGCAAGGTGCCAAGAGAGTCATCAAGCGTATTCTCGA 880 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 721 GTTTAGCTGCCCACCATGGTTCTCGCAAGGTGCCAAGAGAGTCATTAAGCGTATTCTCGA 780 Query 881 ACCCAACCCTATTACCAGAATAAGTATTGCAGAGTTGCTCGAAGATGAATGGTTCAAGAA 940 |||||||||||| ||||||||||||||||||||| | || |||||||||||||||||||| Sbjct 781 ACCCAACCCTATAACCAGAATAAGTATTGCAGAGCTACTAGAAGATGAATGGTTCAAGAA 840 Query 941 AGGGTACAAGCCGCCATCATTTGACCAAGATGACGAGGACATAACCATAGATGATGTTGA 1000 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 841 AGGGTACAAGCCGCCATCATTTGACCAAGATGATGAGGACATAACCATAGATGATGTTGA 900 Query 1001 TGCTGCTTTTAGTAACTCCAAGGAATGTCTTGTAACTGAGAAGAAGGAGAAACCTGTATC 1060 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 901 TGCTGCTTTTAGTAACTCCAAGGAATGTCTTGTAACAGAGAAGAAGGAGAAACCGGTATC 960 Query 1061 CATGAACGCTTTCGAACTTATCTCTAGCTCAAGCGAGTTCAGTCTTGAAAACTTGTTCGA 1120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 CATGAACGCTTTCGAACTTATCTCTAGCTCAAGCGAGTTCAGTCTTGAAAACTTGTTCGA 1020 Query 1121 GAAGCAAGCGCAACTTGTGAAGAAAGAAACGCGGTTTACTTCTCAACGATCTGCGAGTGA 1180 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1021 GAAGCAAGCGCAACTTGTGAAGAAAGAAACGCGGTTTACTTCTCAAAGATCTGCGAGTGA 1080 Query 1181 AATAATGTCGAAAATGGAAGAAACCGCAAAGCCATTAGGCTTT-AATGTCCGTAAAGACA 1239 ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 1081 AATAATGTCGAAAATGGAAGAAACCGCAAAGCCATTAGG-TTTCAATGTCCGTAAAGACA 1139 Query 1240 ACTACAAGATAAAAATGAAAGGAGACAAAAGTGGTCGTAAAGGTCAGCTCTCCGTAGCTA 1299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 ACTACAAGATAAAAATGAAAGGAGACAAAAGTGGTCGTAAAGGTCAGCTCTCCGTAGCTA 1199 Query 1300 CAGAGGTGTTTGAAGTGGCGCCATCATTGCATGTGGTAGAGCTTAGGAAAACCGGTGGTG 1359 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1200 CAGAGGTGTTTGAAGTGGCGCCATCGTTGCATGTGGTAGAGCTTAGGAAAACCGGCGGTG 1259 Query 1360 ATACCCTCGAGTTTCACAAGGTATGTGATTCGTTCTACAAAAACTTCTCATCTGGATTAA 1419 |||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| Sbjct 1260 ATACCCTCGAGTTTCACAAGGTATTTGATCCGTTCTACAAAACCTTCTCATCTGGATTAA 1319 Query 1420 AGGATGTAGTCTGGAATACTGATGCAGCCGCTGAAGAACAAAAGCAATAAGAAATAACAA 1479 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1320 AGGATGTAGTCTGGAATACTGATGCAGCCGCTGAAGAACAAAAGCAATAAAAAATAGCAA 1379 Query 1480 GTTGTTCAATTCAAAGTTTTTAATCAATGTTGAACATGTATAATGAATAGTAAACA-TTC 1538 |||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||| Sbjct 1380 GTTGTTCAATTCAAAGTTTTTAATTAAAGTTGAACATGTATAATGAATAGTAAAAAATTC 1439 Query 1539 TG-GAGTTGGCAATATACAAGTATT 1562 || |||||||||| ||| || |||| Sbjct 1440 TGAGAGTTGGCAAAATAGAATTATT 1464 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63763070130 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5