BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01190.1 Length=1608 Score E Sequences producing significant alignments: (Bits) Value Ahg311315 jgi|Araly1|311315|fgenesh1_pm.C_scaffold_1000095 2453 0.0 Ahg471531 jgi|Araly1|471531|fgenesh2_kg.1__1485__AT1G13710.1 80.5 3e-14 > Ahg311315 jgi|Araly1|311315|fgenesh1_pm.C_scaffold_1000095 Length=1620 Score = 2453 bits (1328), Expect = 0.0 Identities = 1512/1602 (94%), Gaps = 7/1602 (0%) Strand=Plus/Plus Query 1 ATGAGAACCGAAATAGAAAGTTTGTGGGTATTTGCTCTTGCATCAAAATTCAATATTTAC 60 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 16 ATGAGAACCGAAATAGAAAATTTGTGGGTATTTGCTCTTGCATCAAAATTCAATATTTTC 75 Query 61 ATGCAACAACATTTTGCTTCCCTTC-TCGTCGCCATTGCTATCACTTGGTTTACCATAAC 119 |||||| |||||||||||||||||| || ||||||| ||||||||||||| |||| |||| Sbjct 76 ATGCAAGAACATTTTGCTTCCCTTCTTC-TCGCCATAGCTATCACTTGGTGTACCTTAAC 134 Query 120 CATCGTATTTTGGTCTACTCCGGGTGGACCGGCTTGGGGAAAATACTTCTTCACTCGCCG 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 CATCGTATTTTGGTCTACTCCGGGTGGACCGGCTTGGGGAAAATACTTCTTCACTCGCCG 194 Query 180 GTTTATTTCTCTCGATTACAACCGAAAATACAAGAATCTCATTCCCGGTCCTAGAGGGTT 239 ||||| |||||||| | | |||||||||| |||||||||||||||||||||| ||||||| Sbjct 195 GTTTAGTTCTCTCGGTCATAACCGAAAATCCAAGAATCTCATTCCCGGTCCTCGAGGGTT 254 Query 240 TCCACTTGTGGGAAGCATGAGCCTTAGGTCAAGCCACGTGGCTCATCAGCGCATAGCGTC 299 ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 255 TCCACTTGTTGGAAGCATGAGCCTCAGGTCAAGCCACGTGGCTCATCAGCGCATAGCGTC 314 Query 300 TGTGGCTGAGATGAGTAACGCCAAGCGGCTCATGGCGTTTAGCCTCGGTGATACTAAGGT 359 ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 315 AGTGGCCGAGATGAGTAACGCCAAGCGGCTCATGGCGTTTAGCCTCGGCGATACTAAGGT 374 Query 360 GGTGGTGACGTGTCATCCTGCCGTGGC-AAAGGAGATACTAAACAGTTCGGTTTTTGCTG 418 |||||||||||||||||||| |||||| |||| | |||||||||||||| |||||||| | Sbjct 375 GGTGGTGACGTGTCATCCTGACGTGGCGAAAGAA-ATACTAAACAGTTCCGTTTTTGCAG 433 Query 419 ACCGACCGGTTGACGAAACCGCTTACGGTTTGATGTTTAACCGAGCCATGGGATTTGCTC 478 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 434 ACCGGCCGGTTGACGAAACCGCTTACGGTTTGATGTTTAATCGAGCCATGGGATTTGCTC 493 Query 479 CCAATGGTACTTATTGGCGTACGCTGCGTCGGTTAGGCTCGAACCATCTTTTTAACCCGA 538 ||||||||||||| |||||||| |||||||||||| |||||||||||||||| ||||| | Sbjct 494 CCAATGGTACTTACTGGCGTACACTGCGTCGGTTAAGCTCGAACCATCTTTTCAACCCAA 553 Query 539 AGCAAATCAAACAATCGGAGGATCAGAGACGGGTGATAGCGACTCAGATGGTGAATGCGT 598 |||||||||||| |||||||| |||||| | ||||| |||||||||||||| ||||||| Sbjct 554 AGCAAATCAAACGCTCGGAGGAGCAGAGAAGAGTGATCGCGACTCAGATGGTTAATGCGT 613 Query 599 TTGCACGTAACCCTAAATCCGCGTGTGCAGTGCGTGATTTGCTCAAAACAGCGTCGTTGT 658 ||||||| ||| ||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 614 TTGCACGCAACGCTAAATCTGCGTTTGCAGTGCGTGATTTGCTCAAAACAGCGTCGTTGT 673 Query 659 GTAACATGATGGGTTTGGTTTTCGGGAGAGAGTATGAATTGGAGTCAAATAACAACTTGG 718 ||||||||||||| | |||||| |||||||| |||||||||||||||||||||||| ||| Sbjct 674 GTAACATGATGGGATCGGTTTTTGGGAGAGAATATGAATTGGAGTCAAATAACAACGTGG 733 Query 719 AATCTGAATGCTTAAAGGGTTTGGTTGAAGAAGGGTACGATCTTCTAGGTACGTTAAATT 778 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 734 AATCGGAATGCTTAAAGGGTTTGGTTGAAGAAGGGTACGATCTTCTCGGTACGTTAAATT 793 Query 779 GGACCGACCATCTTCCTTGGTTAGCCGGTTTAGATTTCCAACAAATCCGGTTTAGGTGCT 838 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 794 GGACCGACCATCTCCCTTGGTTAGCCGGTTTAGATTTCCAACAAATCCGGTTTAGGTGCT 853 Query 839 CGCAGCTCGTACCGAAAGTAAATCTGTTATTGAGCCGTATCATACATGAACAACGTGCTG 898 | ||||||||||||||||||||||||||| ||||||||||||| |||||||| | | || Sbjct 854 CCCAGCTCGTACCGAAAGTAAATCTGTTACTGAGCCGTATCATTCATGAACA-C-TA-TG 910 Query 899 CCACGGGTAACTTTCTTGACATGTTACTTTCTCTTCAAGGTTCAGAAAAATTATCAGAAT 958 |||| ||||||||||||||| || ||||||| |||||| ||||||||||||||||||| | Sbjct 911 CCACCGGTAACTTTCTTGACGTGCTACTTTCACTTCAACGTTCAGAAAAATTATCAGATT 970 Query 959 CCGACATGGTTGCTGTTCTTTGGGAAATGATATTTAGGGGAACGGACACTGTTGCGGTTT 1018 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 971 CAGACATAGTTGCTGTTCTTTGGGAAATGATATTTAGGGGAACGGACACTGTTGCGGTTT 1030 Query 1019 TGGTCGAGTGGGTGCTAGCGAGGATTGTGATGCATCCCAAAGTTCAATTAACGGTCCACG 1078 || |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 1031 TGATCGAGTGGGTCCTAGCGAGGATTGTGATGCATCCTAAAGTTCAATCAACGGTCCACG 1090 Query 1079 ATGAGCTTGACCGAGTCGTTGGCAGATCAAGAACCGTGGATGAGTCAGACCTTCCATCAC 1138 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1091 ATGAGCTTGACCGAGTCGTTGGCAGATCAAGAACCGTCGATGAGTCAGACCTTCCATCGC 1150 Query 1139 TCACGTATCTAACGGCTATGATCAAAGAAGTGTTGAGGCTGCATCCACCAGGTCCACTGC 1198 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 1151 TCACGTATCTAACGGCTATGATCAAAGAAGTGTTGAGGCTGCATCCACCAGGCCCACTTC 1210 Query 1199 TTTCTTGGGCACGACTGTCTATAACAGACACTTCCGTAGATGGATATCACGTGCCGGCTG 1258 ||||||||||||| || |||||||||||||| ||||||| ||||||||||||||||||| Sbjct 1211 TTTCTTGGGCACGCCTCTCTATAACAGACACCACCGTAGACGGATATCACGTGCCGGCTG 1270 Query 1259 GGACCACCGCGATGGTCAACATGTGGGCTATAGCACGTGACCCACACGTGTGGGAGGATC 1318 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1271 GGACCACCGCGATGGTCAACATGTGGGCTATAGCACGTGACCCGCACGTGTGGGAGGATC 1330 Query 1319 CTTTAGAGTTTAAGCCTGAGAGGTTCGTGGCTAAAGAGGGTGAAGCTGAGTTCTCTGTTT 1378 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1331 CTTTAGAGTTTAAGCCTGAGAGGTTCGTGGCTAAAGATGGTGAAGCTGAGTTCTCTGTTT 1390 Query 1379 TCGGGTCGGATCTGAGGTTGGCACCGTTCGGGTCGGGTAAGAGGGTTTGCCCTGGAAAGA 1438 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1391 TCGGGTCGGATCTGAGGTTGGCACCGTTCGGGTCCGGTAAGAGGGTTTGCCCTGGAAAGA 1450 Query 1439 ATTTGGGACTTACAACGGTGTCGTTTTGGGTTGCAACGCTCTTGCATGAGTTTGAGTGGC 1498 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1451 ATTTGGGGCTTACGACGGTGTCGTTTTGGGTTGCAACGCTCTTGCATGAGTTTGAGTGGC 1510 Query 1499 TTCCTAGCGTCGAAGCTAACCCTCCAGATCTCTCGGAGGTTTTGAGGCTCTCGTGTGAGA 1558 |||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 1511 TTCCAAGCGTCGAAGCAAACCCTCCAGATCTCTCGGAGGTTTTGAGGCTCTCGTGCGAGA 1570 Query 1559 TGGCTTGTCCACTCATCGTTAACGTAAGCTCAAGGCGTAAGA 1600 |||||||||| || ||||||||||||||| |||||||||||| Sbjct 1571 TGGCTTGTCCTCTTATCGTTAACGTAAGCCCAAGGCGTAAGA 1612 > Ahg471531 jgi|Araly1|471531|fgenesh2_kg.1__1485__AT1G13710.1 Length=1792 Score = 80.5 bits (43), Expect = 3e-14 Identities = 78/95 (82%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 961 GACATGGTTGCTGTTCTTTGGGAAATGATATTTAG-GGGAACGGACACTGTTGCGGTTTT 1019 |||||| |||||||||||||||||||||||||||| |||| | || || |||||| || | Sbjct 948 GACATGATTGCTGTTCTTTGGGAAATGATATTTAGAGGGA-CAGATACAGTTGCGATTCT 1006 Query 1020 GGTCGAGTGGGTGCTAGCGAGGATTGTGATGCATC 1054 || || |||||||| || || || || |||||| Sbjct 1007 AGTGGAATGGGTGCTTGCAAGAATGGTTTTGCATC 1041 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60258767590 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5