BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01240.1 Length=1288 Score E Sequences producing significant alignments: (Bits) Value Ahg470152 jgi|Araly1|470152|fgenesh2_kg.1__106__AT1G01240.3 1725 0.0 > Ahg470152 jgi|Araly1|470152|fgenesh2_kg.1__106__AT1G01240.3 Length=1806 Score = 1725 bits (934), Expect = 0.0 Identities = 1102/1181 (93%), Gaps = 19/1181 (2%) Strand=Plus/Plus Query 119 TTGTGTCTTAATGAAATAATGGGAGCAGCTGAAGCAAGAGCATTGTGGCAAAGAACAGCT 178 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 630 TTGTGTCTTAATGTGATAATGGGAGCAGCTGAAGCAAGAGCATTGTGGCAAAGAACAGCA 689 Query 179 AGTCGTTGCTTTGTTGTTCATGAGGATGCTAAGATGGCTCCGAGGTTAGCTTGTTGCCAA 238 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 690 AGTCGTTGCTTTGTTGTTCATGAAGATGCGAAGATGGCTCCGAGGTTAGCTTGTTGCCAA 749 Query 239 CACCAACAATCTTCTTCGGGCAACACCGaaaaaaaCAGCTTTTCTTCCGGAAGTTTTGGA 298 |||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 750 CACCAACATTCTTCTTCGGGCAACACCGAAAAAAGCAGCTTTTCTTCAGGAAGTTTTGGA 809 Query 299 GATTCCTCTGA-TT-T-CTCTTGTGATACCAAATGGTGGCTTAAGGGATCAACTGGTTTT 355 ||||||||||| || | |||||||||||||||||||||||||||||| |||||||| ||| Sbjct 810 GATTCCTCTGATTTCTCCTCTTGTGATACCAAATGGTGGCTTAAGGGGTCAACTGGATTT 869 Query 356 GATGAGGAGGTTACAAACTCCTTTCTTGAAGATACCAAATGCAAGAAATTGCATGAATTT 415 |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| Sbjct 870 GATGAGGAGGTTACAAACTCCTTTTTTGAAGATACCAAATGCAAGAAATTGCAAGAATTT 929 Query 416 GTCGACTTAATCGGAATACGAGAAGAAGAAGACTACAGCTTTATTAGCAAG-AA----A- 469 |||||||| ||||| ||||||||||||||||||||||||||||| |||||| || | Sbjct 930 GTCGACTTGATCGGGATACGAGAAGAAGAAGACTACAGCTTTATAAGCAAGAAAGCTGAC 989 Query 470 GCTGACGCTACAACACCGTGGTGGAGAAGCACGACGGATAAAGATGAATTAGCTCTCATG 529 |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| || Sbjct 990 GCTGACGCTACAACGCCGTGGTGGAGAAGCACGACAGATAAAGATGAATTAGCTCTCTTG 1049 Query 530 GTGGCGACTAAATCGGTTGATCATAATATCCAGAATTGTGATCTTCCTCCACCTCA-AAA 588 ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1050 GTGGCGACTAAATCGATTGATCATAATATCCAGAATTGTGATCTTCCTCCCCCTCAGAAA 1109 Query 589 ACTCCACAAGAGTATTCACTCCT-CGAGTGGAGAAAAAGGGTTTAAAACAGCGGTTAAAT 647 | |||||||||| ||||||| | | ||| | || || ||||||||| ||||||| ||| Sbjct 1110 A-TCCACAAGAGGATTCACT-GTACTAGTAGTGAGAAGGGGTTTAAACCAGCGGTGCAAT 1167 Query 648 CGCCATGGAAGCAAGGAGTTTGGAAG-GATCGGTTTGAGAGATCTTTGAGTTACAATGGT 706 |||||||||| |||||||||||| || |||||||||||||||||||||||||||||| || Sbjct 1168 CGCCATGGAAACAAGGAGTTTGG-AGCGATCGGTTTGAGAGATCTTTGAGTTACAATAGT 1226 Query 707 AGCACAGAGAGCAAGAACACGAGTCCAATGTCTTCCCCTAGAAGTGATGATCTAAGCAAA 766 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1227 AGCACAGAGAGCAAGAACACGAGTCCAATGTCTTCCCCTAGAAATGATGATCTAAGCAAA 1286 Query 767 GGTCAGCTTTTAGAAGCACTAAGGCATTCTCAAACCAGGGCAAGAGAAGCAGAGAGAGCA 826 | |||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||| Sbjct 1287 GCTCAGCTTTTAGAAGCATTAAGGCATTCTCAAACCAGAGCAAGAGAAGCAGAGAAAGCA 1346 Query 827 GCGAGAGAAGCTTGCGCTGAGAAAGACCGTGTGATAACAATCTTGTTGAAACAAGCGAGT 886 || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 1347 GCAAGAGAAGCTTGCGCTGAGAAAGACCGTATGATAACAATCTTGTTGAAACAGGCGAGT 1406 Query 887 CAGATGTTGGCTTATAAGCAATGGTTAAAGCTTCTTGAAATGGAAGCTCTTTATCTGCag 946 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1407 CAGATGTTGGCTTATAAGCAATGGTTAAAGCTTCTAGAAATGGAAGCTCTTTATCTGCAG 1466 Query 947 atgaagaaggaagaagaacaa-gaggaacaggtcaaaggaatgaatctgaagaagagaaa 1005 |||||||||||||||||| || || |||||| |||||||||||||||| |||||||| || Sbjct 1467 ATGAAGAAGGAAGAAGAA-AATGAAGAACAGATCAAAGGAATGAATCTTAAGAAGAGGAA 1525 Query 1006 acagagaggggagaagaagaaaaagggtgagactgggagaTATATGATGGCTTTTGCATT 1065 ||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1526 ACAAAGAGGGAAGAAGAAGAAAAAGGGTGAGATTGGGAGATATATGATGGCTTTTGCATT 1585 Query 1066 AGGGTTTAGTCTCATTGGTGCTGGTTTGCTCTTAGGTTGGACTGTTGGATGGTTGCTTCC 1125 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1586 AGGGTTTAGTCTCATTGGTGCTGGTTTGCTCTTAGGTTGGACTGTTGGATGGTTGTTTCC 1645 Query 1126 CTTCTAGAATCTTGAAA-TGTCTTCTCTTTGGTCACTCATCTTTTCAAGAGTTTTAGGTT 1184 ||||||||||||||||| |||||| | |||| ||||| |||||||||||||||||||||| Sbjct 1646 CTTCTAGAATCTTGAAAATGTCTTTTGTTTGATCACTGATCTTTTCAAGAGTTTTAGGTT 1705 Query 1185 TTATAACTTTTCACTTTACCTCTAAAAttgtgtgtatattttgttaatgtatgtattgtg 1244 |||||||||||||| || ||||||||||||||||||| || ||||||||||||||||||| Sbjct 1706 TTATAACTTTTCACGTTGCCTCTAAAATTGTGTGTATGTTGTGTTAATGTATGTATTGTG 1765 Query 1245 tgatgtttgtgt-aAATTTAATCTTCTGTAGAAGTTTATTT 1284 |||| ||||||| |||||||||||||| ||||||| ||||| Sbjct 1766 TGATATTTGTGTTAAATTTAATCTTCTATAGAAGTATATTT 1806 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48149244171 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5