BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01250.1 Length=840 Score E Sequences producing significant alignments: (Bits) Value Ahg470149 jgi|Araly1|470149|fgenesh2_kg.1__103__AT1G01250.1 1286 0.0 > Ahg470149 jgi|Araly1|470149|fgenesh2_kg.1__103__AT1G01250.1 Length=814 Score = 1286 bits (696), Expect = 0.0 Identities = 780/819 (95%), Gaps = 12/819 (1%) Strand=Plus/Plus Query 26 CACCACAGAGAATGAAGCTATCATCACCACCAGTTACCAACAACGAACCAACCGCCACCG 85 ||| ||||||||||||||||||| |||||||| |||| |||| ||||||||||||||||| Sbjct 1 CACAACAGAGAATGAAGCTATCACCACCACCACTTACTAACAGCGAACCAACCGCCACCG 60 Query 86 CTTCTGCCGTTAAATCTTGCGGCGGAGGAGGTAAAGAAACCAGCTCATCGACCACGAGGC 145 |||||||||| |||||||||||||||| || ||||||||||| | ||||||||||||| Sbjct 61 CTTCTGCCGTGAAATCTTGCGGCGGAGTTGGCAAAGAAACCAG--C-TCGACCACGAGGC 117 Query 146 ATCCAGTGTACCACGGAGTTCGCAAACGCCGATGGGGAAAATGGGTTTCTGAGATCAGAG 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 ATCCAGTGTACCACGGAGTTCGCAAACGCCGATGGGGAAAATGGGTTTCTGAGATCAGAG 177 Query 206 AGCCCCGGAAAAAGTCTCGGATTTGGCTCGGATCTTTTCCGGTGCCGGAGATGGCTGCTA 265 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 AGCCCCGGAAAAAATCTCGGATTTGGCTCGGATCTTTTCCGGTGCCGGAGATGGCTGCTA 237 Query 266 AGGCCTACGACGTGGCAGCGTTTTGTCTAAAAGGTAGAAAAGCTCAGCTGAA-TTTCCCT 324 | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 238 AAGCCTACGACGTGGCAGCGTTTTGTCTAAAAGGTAGAAAAGCTCAGCTGAATTTTCCC- 296 Query 325 GAAGAAATCGAGGATCTACCTCGACCGTCCACGTGTACTCCCAGAGATATCCAAGTCGCA 384 || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 297 GACGAAATCGACGATCTACCTCGACCGTCCACGTGTACTCCCAGAGATATCCAAGTCGCG 356 Query 385 GCGGCCAAAGCAGCCAACGCCGTGAAGATCATCAAAATGGGAGATGATGACGTGGCAGGA 444 ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | Sbjct 357 GCGGCCAAAGCAGCCAACGGCGTCAAGATCATCAAAATGGGAGATGATGACGTGGCAGAA 416 Query 445 ATAGACGACGGAGATGATTTCTGGGAAGGCATTGAGCTGCCTGAGCTTATGATGAGTGGA 504 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 417 ATAGACGACGGAGATGATTTCTGGGAAGGCATTGAGCTGCCGGAGCTTATGATGACTGGA 476 Query 505 GGTGGGTGGTCGCCGGAGCCTTTTGTTGCCGGAGATGATGCCACGTGGCTTGTCGACGGA 564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 477 GGTGGGTGGTCGCCGGAGCCTTTTGTTGCCGGAGATGATGCCACGTGGCTTGTCGACGGA 536 Query 565 GACTTGTATCAGTATCAGTTCATGGCGTGTCTGTGAGTGTTGCTGTCGATTGTGTCGTAT 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GACTTGTATCAGTATCAGTTCATGGCGTGTCTGTGAGTGTTGCTGTCGATTGTGTCGTAT 596 Query 625 TCGTTATACGTGTACGTTGTATCGTTATTGTGTTGGCTCACTTAATTTAATGCATATGCA 684 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 597 TCGTTATACGTGTACGTTGTATTGTTATTGTGTTGGCTCACTTAATTTAATGCATATGCA 656 Query 685 TGTATATTTTCATTTATTTGTTTCTAGTTTATTGTTTTACGCGATTAATAATTAGATACC 744 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 657 TGTATATTTTCATTTATTTGTTTCTAGTTTATTGTTTTACGCGATTAATAATTAGATACC 716 Query 745 TGTTTCTCAAGTTAGTTATCAGGTTTGTACGCATCTACAAAAATACGTATAA-G-T---- 798 ||||||| |||||||||||||||||| |||| |||| | | |||||||||| | | Sbjct 717 TGTTTCTTAAGTTAGTTATCAGGTTTCTACG-ATCTTGATATATACGTATAACGGTATAA 775 Query 799 GTATGTTCTTATATACAGTTTTTGTTTGCATAAGTATTG 837 |||||||||||||||||||||| |||||||||||||||| Sbjct 776 GTATGTTCTTATATACAGTTTTAGTTTGCATAAGTATTG 814 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31070177355 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5