BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01355.1 Length=687 Score E Sequences producing significant alignments: (Bits) Value Ahg918832 jgi|Araly1|918832|scaffold_100113.1 599 9e-171 Ahg333932 jgi|Araly1|333932|fgenesh1_pg.C_scaffold_1000497 159 2e-38 Ahg918913 jgi|Araly1|918913|scaffold_100194.1 128 5e-29 Ahg919135 jgi|Araly1|919135|scaffold_100416.1 117 1e-25 > Ahg918832 jgi|Araly1|918832|scaffold_100113.1 Length=568 Score = 599 bits (324), Expect = 9e-171 Identities = 405/442 (92%), Gaps = 13/442 (3%) Strand=Plus/Plus Query 29 GGTGTCCGGTT-CCGGCTGACGTTGATGTTCGCAGGGTCGGTCCGTGTATAAAACGGGCT 87 ||||||||||| || | ||||||||||||||| ||||| |||||||||||||||||||| Sbjct 88 GGTGTCCGGTTCCCAG-TGACGTTGATGTTCGTAGGGTGGGTCCGTGTATAAAACGGGCG 146 Query 88 TTGGAGAAATTAGGCTACTCTGGTCCTCTCACCATCACTGCCGTTGGGATACTAACAGAC 147 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 147 TTGGAGAAATTAGGCTACTCTGGTCCTCTCACCATCACTGCCGTTGGCATACTAACAGAC 206 Query 148 GTCCCTCATGACTTCCTCAGACAAGTCCATTCCTCTGGAATCGCTCTTCATCACGTTCCC 207 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 207 GTCCCGCATGACTTCCTCAGACAAGTCCATTCCTCTGGAATCGCTCTTCATCACGTTCCC 266 Query 208 ACCGTTTCCGAAACAGCTCTCTCAGGGATTGGGTGGGCTGTGGTTAAGTGGACCTGGTAT 267 |||||||| ||||||| | ||||||| |||||||||||||| ||||||||||||||||| Sbjct 267 ACCGTTTCTGAAACAGATATCTCAGGCCTTGGGTGGGCTGTGCTTAAGTGGACCTGGTAT 326 Query 268 AATCAACCTCCGGCTAATTTAATGCTCATATCGTACGAGC-ATATCTACTTG-ACCACTC 325 ||||||||||||||||||||||||||||||||||| |||| | |||| |||| || |||| Sbjct 327 AATCAACCTCCGGCTAATTTAATGCTCATATCGTATGAGCCA-ATCTTCTTGGAC-ACTC 384 Query 326 TTGACATGCTAGGTAGGATCGGATACAACACTGTTCGGTCTATTCTTCCAGATGATCCTC 385 ||| |||||||||| ||||||||||||||| ||||| |||||| ||||||||||||| | Sbjct 385 TTGGCATGCTAGGTGGGATCGGATACAACATTGTTCTGTCTATACTTCCAGATGATCTTG 444 Query 386 AACAAGCCGCATCCTCCGCCTCC-C--C-T-T-CTACAGGGTCTTTCCTCTGGGAAAGCT 439 |||||||||||||||||| |||| | | | | || |||||| ||||||||||||||||| Sbjct 445 AACAAGCCGCATCCTCCGGCTCCGCTTCCTCTTCTGCAGGGTGTTTCCTCTGGGAAAGCT 504 Query 440 TACTGGCAAGCTT-ACCAGCAG 460 ||||||||||||| |||||||| Sbjct 505 TACTGGCAAGCTTTACCAGCAG 526 > Ahg333932 jgi|Araly1|333932|fgenesh1_pg.C_scaffold_1000497 Length=636 Score = 159 bits (86), Expect = 2e-38 Identities = 154/185 (83%), Gaps = 12/185 (6%) Strand=Plus/Plus Query 29 GGTGTCCGGTTCCGGCTGACGTTGATGTTCG-CAGGGTCGGTCCGTGTATAAAACGGGCT 87 ||||||||||||| ||| | |||||| ||| | |||||||||||||||| | |||| | Sbjct 53 GGTGTCCGGTTCCCACTGGCTTTGATGCTCGTC-GGGTCGGTCCGTGTATCAGACGGT-T 110 Query 88 -TTGGAGAAATTAGGCTACTCTGGTCCTCTCACCATCACTGCCGTTGGGATACTAACAGA 146 |||||||| ||||||||| |||||||||||||||||||||||||||| ||||| ||||| Sbjct 111 ATTGGAGAATTTAGGCTACACTGGTCCTCTCACCATCACTGCCGTTGGCATACTGACAGA 170 Query 147 CGTCC-CTCATGACTTCCT-C-AGACAAGTC-CATTCCTCTGGAATCGCTCTTCATCACG 202 || || || ||||||| || | || || || | |||| |||||||| ||||| |||||| Sbjct 171 CG-CCTCTGATGACTTTCTGCGAGCCA--TCAC-TTCCACTGGAATCACTCTTGATCACG 226 Query 203 TTCCC 207 | ||| Sbjct 227 TCCCC 231 > Ahg918913 jgi|Araly1|918913|scaffold_100194.1 Length=1219 Score = 128 bits (69), Expect = 5e-29 Identities = 114/135 (84%), Gaps = 6/135 (4%) Strand=Plus/Plus Query 64 GTCGGTCCGTGTATAAAACGGGCTTTGGAGAAAT-TAGGCTACTCTGGTCCTCTCACCAT 122 |||||||||||||| |||||| ||||||| ||| |||||||||||||||||||||||| Sbjct 843 GTCGGTCCGTGTATTAAACGGTTTTTGGAG-AATAAAGGCTACTCTGGTCCTCTCACCAT 901 Query 123 CACTGCCGTTGG-GATACTA-ACAGACGTCCCTCATGACTTCCTCAGACAAGTCCATTCC 180 ||||||| | || | |||| | |||||||||| ||||| |||| ||| ||||||||| Sbjct 902 CACTGCCATGGGCGC-ACTAGA-AGACGTCCCTTATGACATCCTGAGAGGAGTCCATTCA 959 Query 181 TCTGGAATCGCTCTT 195 ||||||||||||| Sbjct 960 AGTGGAATCGCTCTT 974 > Ahg919135 jgi|Araly1|919135|scaffold_100416.1 Length=1647 Score = 117 bits (63), Expect = 1e-25 Identities = 113/136 (83%), Gaps = 8/136 (6%) Strand=Plus/Plus Query 64 GTCGGTCCGTGTATAAAACGGGCTTTGGAGAAAT-TAGGCTACTCTGGTCCTCTCACCAT 122 |||||||||||||| |||||| ||||||| ||| |||||||||||||||||||||||| Sbjct 1025 GTCGGTCCGTGTATTAAACGGTTTTTGGAG-AATAAAGGCTACTCTGGTCCTCTCACCAT 1083 Query 123 CACTGCCGTTGG-GATACTA-ACAGACGTCCCTCATGACTTCCTCAGAC-AAGTCCATTC 179 ||||||| | || | |||| | |||||||||| ||||| |||| ||| || || |||| Sbjct 1084 CACTGCCATGGGCGC-ACTAGA-AGACGTCCCTAATGACATCCTGAGAGGAA-TCTATTC 1140 Query 180 CTCTGGAATCGCTCTT 195 | ||||||| ||||| Sbjct 1141 CAGTGGAATCTCTCTT 1156 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25237371054 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5