BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01390.1
Length=1687
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470140 jgi|Araly1|470140|fgenesh2_kg.1__94__AT1G01390.1 2206 0.0
Ahg470138 jgi|Araly1|470138|fgenesh2_kg.1__92__AT1G01420.1 1199 0.0
Ahg490463 jgi|Araly1|490463|fgenesh2_kg.6__3597__AT4G01070.1 665 0.0
> Ahg470140 jgi|Araly1|470140|fgenesh2_kg.1__94__AT1G01390.1
Length=1572
Score = 2206 bits (1194), Expect = 0.0
Identities = 1378/1467 (94%), Gaps = 12/1467 (1%)
Strand=Plus/Plus
Query 43 TTAATGGCGGAAGCAAACACTCCACACATAGCAATCATGCCGAGTCCCGGTATGGGTCAC 102
|||||||| |||||||||||||||| ||||| ||||| ||||||||||| |||||||||
Sbjct 10 TTAATGGCAAAAGCAAACACTCCACATATAGCCATCATACCGAGTCCCGGAATGGGTCAC 69
Query 103 CTTATCCCATTCGTCGAGTTAGCAAAGCGACTCGTTCAGCACGACTGTTTCACCGTCACA 162
|| |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||
Sbjct 70 CTCATCCCATTCGTCGAGTTAGCTAAGCGACTCGTTGAGCACGACTGTTTCACCATCACA 129
Query 163 ATGATCATCTCCGGTGAAACTTCGCCGTCTAAGGCACAAAGATCCGTTCTCAACTCTCTC 222
||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 130 TTGATCATCTCCAGTGAATCTTCGCCGTCTAAGGCACAAAAATCCGTTCTCAACTCTCTC 189
Query 223 CCTTCCTCCATAGCCTCCGTATTTCTCCCTCCCGCCGATCTTTCCGATGTTCCCTCCACA 282
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CCTTCCTCCATAGCCTCCGTATTTCTCCCTCCCGCCGATCTTTCCGATGTTCCCTCCACT 249
Query 283 GCGCGAATCGAAACTCGGGCCATGCTCACCATGACTCGTTCCAATCCGGCGCTCCGGGAG 342
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 250 GCACGAATCGAAACTCGGGTCATGCTCACCATGACTCGTTCCAATCCGGCGCTCCGGGAG 309
Query 343 CTTTTTGGCTCTTTATCAACGAAGAAAAGTCTCCCGGCGGTTCTCGTCGTCGATATGTTT 402
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 310 CTTTTTGGCTCCTTATCAACGAAGAAACGTCTCCCGGCGGTTCTCGTCGTCGATATGTTT 369
Query 403 GGTGCGGATGCGTTCGACGTGGCCGTTGACTTCCACGTGTCACCATACATTTTCTATGCA 462
||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GGTACGGATGCTTTCGATGTGGCCGTTGACTTCCACGTGTCACCATACATTTTCTATGCA 429
Query 463 TCCAATGCAAACGTCTTGTCGTTTTTTCTTCACTTGCCGAAACTAGACAAAACGGTGTCG 522
|| ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 430 TCAAATGCCAACGTCTTGTCGTTTTTTCTTCACTTGCCGAAACTTGACGAAACGGTGTCG 489
Query 523 TGTGAGTTTAGGTACTTAACCGAACCGCTTAAGATTCCCGGCTGTGTCCCGATAACCGGT 582
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 490 TGTGAGTTTAGGTACTTAACCGAACCGGTTAAGATTCCCGGCTGTGTCCCGGTAACCGGT 549
Query 583 AAGGACTTTCTTGATACGGTTCAAGACCGAAACGACGACGCATACAAATTGCTTCTCCAT 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 AAGGACTTTCTTGATACGGTTCAAGACCGAAACGACGACGCATACAAATTGCTTCTCCAT 609
Query 643 AACACCAAGAGGTACAAAGAAGCTAAAGGGATTCTAGTGAATTCCTTCGTTGATTTAGAG 702
|||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||
Sbjct 610 AACACCAAGAGGTACAAAGAAGCTAAAGGGATTCTAGTGAATTCATTCATCGATTTAGAG 669
Query 703 TCGAATGCAATAAAGGCCTTACAAGAACCGGCTCCTGATAAACCAAC-GGTATACCCGAT 761
||||||| |||||||| ||||||||||||||||||||||||||| | ||| ||||| ||
Sbjct 670 CCGAATGCTATAAAGGCTTTACAAGAACCGGCTCCTGATAAACCA-CTGGTTTACCCAAT 728
Query 762 TGGGCCGCTGGTTAACACAAGTTCATCTAATGTTAACTTGGAAGACAAGTTCGGATGTTT 821
||| |||||||||||||||||||||||| |||||||| ||||| |||||| || ||||||
Sbjct 729 TGGCCCGCTGGTTAACACAAGTTCATCTGATGTTAACGTGGAAAACAAGTCCGAATGTTT 788
Query 822 A-AGTTGGCTAGACAACCAACCATTCGGCTCGGTTCTATACATATCATTTGGAAGCGGCG 880
| | |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 789 AGA-TTGGCTAGACAAGCAACCATTCGGCTCGGTTCTATATATATCATTTGGAAGCGGCG 847
Query 881 GAACACTTACATGT-GAGCAGTTTAATGAGCTTGCTATTGGTCTTGCGGAGAGCGGA-AA 938
||||||| ||| || |||||||| |||||||||||| |||||||||| ||||||| | ||
Sbjct 848 GAACACTCACA-GTTGAGCAGTTCAATGAGCTTGCTCTTGGTCTTGCAGAGAGCG-ATAA 905
Query 939 ACGGTTTATTTGGGTCATACGAAGTCCAAGCG-AGATAGTTAGTTCGTCGTATTTCAATC 997
|||||||||||||| ||||||||||||||||| || ||| ||||||||| ||||||||||
Sbjct 906 ACGGTTTATTTGGGCCATACGAAGTCCAAGCGGAG-TAGCTAGTTCGTCATATTTCAATC 964
Query 998 CACACAGCGAGACAGACCCCTTTTCGTTTTTACCAATTGGGTTCTTAGACCGAACCAAAG 1057
|||||||| | || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 965 CACACAGCCAAACCGACCCCTTTTCGTTTTTACCAATTGGATTCTTAGACCGAACCAAAG 1024
Query 1058 AGAAAGGTTTGGTGGTTCCATCATGGGCTCCACAGGTTCAAATCCTGGCTCATCCATCCA 1117
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 AGAAAGGTCTGGTGGTTCGGTCATGGGCTCCACAGGTTCAAATCCTGGCTCATCCATCCA 1084
Query 1118 CATGCGGGTTTTTAACACACTGTGGATGGAATTCGACCTTAGAAAGCATTGTAAACGGTG 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 CATGCGGGTTTTTAACACACTGTGGATGGAATTCGACCTTAGAAAGCATTGTAAACGGTG 1144
Query 1178 TACCACTCATAGCGTGGCCTTTATTCGCGGAGCAAAAGATGAATACATTGCTACTCGTGG 1237
||||||||||||| ||||||||||| |||||||||||||||||| ||||||| |||||||
Sbjct 1145 TACCACTCATAGCATGGCCTTTATTTGCGGAGCAAAAGATGAATGCATTGCTTCTCGTGG 1204
Query 1238 AGGATGTTGGAGCGGCTCTAAGAATCCATGCGGGTGAAGATGGGATTGTACGGAGGGAAG 1297
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1205 AGGATGTTGGAGCGGCTCTAAGAATCCATGCGGGTGGAGATGGGATTGTACGGAGGGAAG 1264
Query 1298 AAGTGGTGAGAGTGGTGAAGGCACTGATGGAAGGTGAAGAGGGAAAAGCCATAGGAAATA 1357
||||||||||||||||||||| |||||||||||| ||||| |||||||||||||| ||||
Sbjct 1265 AAGTGGTGAGAGTGGTGAAGGGACTGATGGAAGGAGAAGAAGGAAAAGCCATAGGGAATA 1324
Query 1358 AAGTGAAGGAGTTGAAAGAAGGAGTTGTTAGAGTCTTGGGTGACGATGGATTGTCCAGCA 1417
|| |||||||||||||| |||||||||||| ||||||||| ||||||||||| |||| ||
Sbjct 1325 AAATGAAGGAGTTGAAACAAGGAGTTGTTAAAGTCTTGGGAGACGATGGATTCTCCACCA 1384
Query 1418 AGTCATTTGGTGAAGTTTTGTTAAAGTGGAAA-ACGCACCAGCGAGATATCAACCAAGAG 1476
|||||||| ||||| ||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 1385 AGTCATTTAGTGAACTTTTGTTAAAGTGGAAAGAC-CACCAGCGAGAAATCAACCAAGAG 1443
Query 1477 ACGTCCCACTAAATATGTGAGTTTGAG 1503
|||||||| ||||||||||||||||||
Sbjct 1444 ACGTCCCATTAAATATGTGAGTTTGAG 1470
> Ahg470138 jgi|Araly1|470138|fgenesh2_kg.1__92__AT1G01420.1
Length=1440
Score = 1199 bits (649), Expect = 0.0
Identities = 1022/1203 (85%), Gaps = 22/1203 (2%)
Strand=Plus/Plus
Query 46 ATGGCGGAAGCAAACACTCCACACATAGCAATCATGCCGAGTCCCGGTATGGGTCACCTT 105
||||| |||||||||| | |||| |||||||||| || ||||||||||| ||||||||
Sbjct 1 ATGGCAGAAGCAAACAGTTCACATGTAGCAATCATACCAAGTCCCGGTATAGGTCACCTC 60
Query 106 ATCCCATTCGTCGAGTTAGCAAAGCGACTCGTTCAGC-A-CGACTGTTTCACCGTCACAA 163
|||||| |||||||||||||||||||||||||| | | | | || |||||||||||||
Sbjct 61 ATCCCACTCGTCGAGTTAGCAAAGCGACTCGTTGA-CAATC-ACGGTTTCACCGTCACTT 118
Query 164 T-GATCATCTCCGGTGAAACTTCGCCGTCTAAGGCACAAAGATCCGTTCTCAACTCTCTC 222
| | ||||| |||| || || | ||||||||||| ||||| ||||||||||||||||||
Sbjct 119 TCG-TCATCCCCGGCGATTCTCCTCCGTCTAAGGCTCAAAGCTCCGTTCTCAACTCTCTC 177
Query 223 CCTTCCTCCATAGCCTCCGTATTTCTCCCTCCCGCCGATCTTTCCGATGTTCCCTCCACA 282
|||||||||||||||||| | || ||||||||||||||||||||||| ||||| || ||
Sbjct 178 CCTTCCTCCATAGCCTCCTTCTTCCTCCCTCCCGCCGATCTTTCCGACGTTCCATCAACG 237
Query 283 GCGCGAATCGAAACTCGGGCCAT-GCTCACCATGACTCGTTCCAATCCGGCGCTCCGGGA 341
|| ||||||||||||||| || |||||| ||||||||||||| ||||||||||||||
Sbjct 238 GCTCGAATCGAAACTCGGAT-ATCGCTCACTGTGACTCGTTCCAACCCGGCGCTCCGGGA 296
Query 342 GCTTTTTGGCTCTTTATCAACGAAGAAAAGTCTCCCGGCGGTTCTCGTCGTCGATATGTT 401
||||||| |||| ||||| || ||||| |||||| || |||||||||||||||||| ||
Sbjct 297 GCTTTTTCGCTCGTTATCGGCGGAGAAACGTCTCCAGGTGGTTCTCGTCGTCGATATATT 356
Query 402 TGGTGCGGATGCGTTCGACGTGGCCGTTGACTTCCACGTGTCACCATACATTTTCTATGC 461
|||| ||||||||||||||||||| |||| ||||||||||| |||||||||||||||||
Sbjct 357 TGGTACGGATGCGTTCGACGTGGCTATTGAGTTCCACGTGTCGCCATACATTTTCTATGC 416
Query 462 ATCCAATGCAAACGTCTTGTCGTTTTTTCTTCACTTGCCGAAA-CTAGACAAAACGGTGT 520
||| ||||| |||||| | ||||| | ||||||||||| || |||||| |||||||||
Sbjct 417 ATCAAATGCCAACGTCCTCACGTTTCTGCTTCACTTGCC-AATGCTAGACGAAACGGTGT 475
Query 521 CGTGTGAGTTTAGGTACTTAACCGAACCGCTTAAGATTCCCGGCTGTGTCCCGATAACCG 580
|||||||||||||| |||||| ||||||| ||| ||||||||| ||| |||| |||||||
Sbjct 476 CGTGTGAGTTTAGGGACTTAATCGAACCGGTTATGATTCCCGGTTGTATCCCTATAACCG 535
Query 581 GTAAGGACTTTCTT-GATACG-GTTCAAGACCGAAACGACGACGCATACAAATTGCTTCT 638
|||| || |||| | ||| || || |||||||||||||| ||| ||||||||| ||||||
Sbjct 536 GTAAAGA-TTTCGTCGATCCGTGT-CAAGACCGAAACGATGACTCATACAAATGGCTTCT 593
Query 639 CCATAACACCAAGAGGTACAAAGAAGCTAAAGGGATTCTAGTGAATTCCTTCGTTGATTT 698
||| ||| |||||| | |||||||||| ||||||||||||||||||||||| | |||||
Sbjct 594 CCACAACGTCAAGAGATTCAAAGAAGCTGAAGGGATTCTAGTGAATTCCTTCATCGATTT 653
Query 699 AGAGTCGAATGCAATAAAGGCCTTACAAGAACCGGCTCCTGATAAACCAACGGTATACCC 758
|||| | || | |||||| ||||||||||| ||||||||||||||| |||| |||||
Sbjct 654 AGAGCCTAACACTATAAAGATTTTACAAGAACCTGCTCCTGATAAACCACCGGTTTACCC 713
Query 759 GATTGGGCCGCTGGTTAACACAAGTTCAT-CTAATGTTAACTTGGAAGACAAGTTCG-GA 816
||||| ||| |||||||| | |||||| | | || |||| || | || ||| | |
Sbjct 714 AATTGGCCCGTTGGTTAACTCGGGTTCATACGA-TGCTAACGTGCACGATGAGTACAAG- 771
Query 817 TGTTTAAGTTGGCTAGACAACCAACCATTCGGCTCGGTTCTATACATATCATTTGGAAGC 876
||||||| ||||||||||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct 772 TGTTTAAATTGGCTAGACAGCCAACCATTCGGCTCGGTTCAATACGTATCATTTGGAAGC 831
Query 877 GGCGGAACACTTACATGTGAGCAGTTTAATGAGCTTGCTATTGGTCTTGCGGAGAGCGGA 936
||||||||||| || ||||| ||||| ||||| || ||| |||||||||||||||| |||
Sbjct 832 GGCGGAACACTCACGTGTGAACAGTTCAATGAACTCGCTTTTGGTCTTGCGGAGAGTGGA 891
Query 937 AAACGGTTTATTTGGGTCATACGAAGTCCAAGCGAGATAGTTAGTTCGTCGTATTTCAAT 996
|||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| |||
Sbjct 892 AAACGGTTTATTTGGGTCATACGAAGTCCAAGCGGGATAGCTAGTTCATCGTATTTTAAT 951
Query 997 CCACACAGCGAGACAGACCCCTTTTCGTTTTTACCA-ATTGGGTTCTTAGACCGAACCAA 1055
||||| ||| | || || || ||||||||||||||| | ||||||||||||| ||||||
Sbjct 952 CCACATAGCCAAACTGATCCATTTTCGTTTTTACCACAA-GGGTTCTTAGACCAAACCAA 1010
Query 1056 AGAGAAAGGTTTGGTGGTTCCATCATGGGCTCCACAGGTTCAAATCCTGGCTCATCCATC 1115
||| |||||| | |||||| ||||||||||||||| |||||| ||| ||||| ||||
Sbjct 1011 AGAAAAAGGTCTAGTGGTTGGGTCATGGGCTCCACAGACTCAAATTCTGACTCATACATC 1070
Query 1116 CACATGCGGGTTTTTAACACACTGTGGATGGAATTCGAC-CTTAGAAAGCATTGTAAACG 1174
| | || |||||||| || ||||||||||||||||| || |||||| ||||| ||||
Sbjct 1071 TGTAGGTGGATTTTTAACGCATTGTGGATGGAATTCGACTCT-AGAAAGTATTGTTAACG 1129
Query 1175 GTGTACCACTCATAGCGTGGCCTTTATTCGCGGAGCAAAAGATGAATACATTGCTACTCG 1234
|| |||| |||||||| ||||| |||| ||| |||||||||||||| |||||||||| |
Sbjct 1130 GTATACCGCTCATAGCATGGCCATTATACGCAGAGCAAAAGATGAACGCATTGCTACTAG 1189
Query 1235 TGG 1237
|||
Sbjct 1190 TGG 1192
> Ahg490463 jgi|Araly1|490463|fgenesh2_kg.6__3597__AT4G01070.1
Length=1810
Score = 665 bits (360), Expect = 0.0
Identities = 1038/1358 (76%), Gaps = 76/1358 (6%)
Strand=Plus/Plus
Query 76 ATCATGCCGAGTCCCGGTATGGGTCACCTTATCCCATTCGTCGAGTTAGC-AAAGCGACT 134
||||| || ||||| || |||||||| || |||||| |||||||||| || ||| |||||
Sbjct 173 ATCATACCAAGTCCGGGAATGGGTCATCTCATCCCACTCGTCGAGTTCGCTAAA-CGACT 231
Query 135 CGTTCAGCACG--ACTGTTTCACCGTCACAAT-GATCATCTCCGGTGAAACTTCGCCGTC 191
|||||| ||| || | |||||||| || | | ||||| |||| ||| | | |||||
Sbjct 232 CGTTCA--ACGTCACGGCTTCACCGTTACCTTCG-TCATCGCCGGGGAAGGTCCACCGTC 288
Query 192 TAAGGCACAAAGATCCGTTCTCAACTCTCTCCCTTCCTCCATAGCCTCCGTATTTCTCCC 251
|| || || ||| |||| || ||||||||||||| || || | ||||| | ||||||
Sbjct 289 AAAAGCTCAGAGAACCGTCCTTGACTCTCTCCCTTCTTCGATCTCATCCGTCTATCTCCC 348
Query 252 TCCCGCCGATCTTTCCGATGT-TC--CCTCCACAGCGCGAATCGAAACTCGGGCCAT-GC 307
||||| ||||| |||| | || | ||||| ||| |||||| ||||| | | |
Sbjct 349 TCCCGTTGATCTCAGCGATCTATCTTCGTCCAC-TCGC--ATCGAATCTCGGATC-TCCC 404
Query 308 TCACCATGACTCGTTCCAATCCGGCGCTCCGG-GAGCTTTTTGGCTCTTTATCAAC-GAA 365
||||| |||||||||| || |||| ||||||| || | || | ||| || | | | |
Sbjct 405 TCACCGTGACTCGTTCAAACCCGGAGCTCCGGAAAG-TCTTCGACTCGTTCGCGGCGGGA 463
Query 366 GAAAAGTCTCCCGGCGGTTCTCGTCGTCGATATGTTTGGTGCGGATGCGTTCGACGTGGC 425
| || | ||| ||| ||| |||||||| | || ||| |||| || |||||||||||
Sbjct 464 G-GTCGTTTGCCGACGGCGCTCATCGTCGATCTCTTCGGTACGGACGCTTTCGACGTGGC 522
Query 426 CGTTGACTTCCACGTGTCACCATACATTTTCTATGCATCCAA-TGCAAACGTCTTGTCGT 484
||| || |||||||||||||| || |||||||| || ||| || |||||||||||||
Sbjct 523 CGTAGAATTCCACGTGTCACCGTATATTTTCTACCCA-ACAACGGCCAACGTCTTGTCGT 581
Query 485 TTTTTCTTCACTTGCCGAAACTAGACAAAACGGTGTCGTGTGAGTTTAGGTACTTAACCG 544
||||||| || ||||| ||||||||| ||||||||||||||||||| ||| | |||||||
Sbjct 582 TTTTTCTCCATTTGCCTAAACTAGACGAAACGGTGTCGTGTGAGTTCAGGGAATTAACCG 641
Query 545 AACCGCTTAAGATTCCC-GGCTGTGTCCCGATAACCGGTAAGGACTTT-CTTGATACGGT 602
||||||||||| |||| || ||||| ||| | |||| || || ||| ||||| |||
Sbjct 642 AACCGCTTAAG-CTCCCTGGATGTGTACCGGTCGCCGGGAAAGA-TTTCCTTGACCCGGC 699
Query 603 TCAAGACC-GAAACGACGACGCATACAAATTGCTTCTCCATAACACCAAGAGGTACAAAG 661
||||||| |||| ||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 700 CCAAGACCGGAAA-GACGATGCATACAAATGGCTTCTCCATAACACCAAGAGGTACAAAG 758
Query 662 AAGCTAAAGGGATTCTAGTGAATTCCTTCGTTGATTTAGAGTCGAATGCAATAAAGGCCT 721
||||| |||||||||| |||||| ||||| |||| ||||| | ||||| ||||||||||
Sbjct 759 AAGCTGAAGGGATTCTTGTGAATACCTTCTTTGAGCTAGAGCCAAATGCTATAAAGGCCT 818
Query 722 TACAAGAACC-GGCTCCT-GATAAACCAACGGTATACCCGATTGGGCCGCTGGTTAACA- 778
| |||||||| || || | ||||||||| | || || ||| |||| ||| |||||||||
Sbjct 819 TGCAAGAACCAGG-TC-TAGATAAACCACCCGTTTATCCGGTTGGACCGTTGGTTAACAT 876
Query 779 C---AAGTTC-AT-CTAATGTTAACTTGGAAGACAAGTTCGGA-TGTTTAA-GTTGGCTA 831
| ||| | |||| |||| | |||| || | || ||||||| || || |
Sbjct 877 CGGTAAGCAAGAGGCTAAACA-AACT-G-AAGA---GT-CTGAATGTTTAAAGT-GGTTG 928
Query 832 GACAACCAACCATTCGGCTCGGTTCTATACATATCATTTGGAAGCGGCGGAACACTTACA 891
|| ||||| || |||| |||||| | ||| | || ||||| || ||||| ||||| |||
Sbjct 929 GATAACCAGCCGCTCGGTTCGGTTTTGTACGTGTCCTTTGGTAGTGGCGGTACACTCACA 988
Query 892 TGTGAGCAGTTTAATGAGCTTGCTATTGGTCTTGCGGAGAGCG-GAAAACGGTTTATTTG 950
||||| ||| | |||||||||||| |||||||||| || || | | || |||||| ||||
Sbjct 989 TGTGAACAGCTCAATGAGCTTGCTCTTGGTCTTGCAGATAGTGAGCAA-CGGTTTCTTTG 1047
Query 951 GGTCATACGAAGTCCAAGCGAGATAGTTAGTTCGTCGTATTTCAATCCACACAGCGAGAC 1010
|||||||||||||||||| | ||| | || ||||||||||||| || |||| ||| | ||
Sbjct 1048 GGTCATACGAAGTCCAAGTGGGATTGCTAATTCGTCGTATTTCGATTCACATAGCCAAAC 1107
Query 1011 AGACCCCTTTTCGTTTTTACCAATTGGGTTCTTAGACC-GAACCAAAGAGAAAGGTTTGG 1069
|| || || | ||||||||| || || ||||| | || ||||| | | |||||| |
Sbjct 1108 CGATCCATTGACATTTTTACCACCAGGATTTTTAGAGCAGA-CCAAAAACAGAGGTTTTG 1166
Query 1070 TGGTTCCATCATGGGCTCCACAGGTTCAAATCCTGGCTCATCCATCCACATGCGGGTTTT 1129
|| | || | ||||||||||| | ||| || | || ||||||||||| | |||||||
Sbjct 1167 TGATCCCTTTTTGGGCTCCACAAGCCCAAGTCTTAGCACATCCATCCACGGGAGGGTTTT 1226
Query 1130 TAACACACTGTGGATGGAATTCGAC-CTTAGAAAGCATTGTAAACGGTGTACCACTCATA 1188
|||| || || |||||||||||||| || ||| || | |||| |||| | ||||| |||
Sbjct 1227 TAACTCATTGCGGATGGAATTCGACTCT-AGAGAGTGTAGTAAGCGGTATTCCACTTATA 1285
Query 1189 GCGTGGCCTTTATTCGCGGAGCAAAAGATGAATACA-TTGCTACTC-GTGGAGGATGTTG 1246
|| ||||| |||| ||| ||||| ||||||||| | || | | ||| || || ||
Sbjct 1286 GCATGGCCATTATACGCTGAGCAGAAGATGAATGCGGTTT-TGTTGAGTGAAG-ATATTC 1343
Query 1247 GAGCGGCTCTAAGAA-TCCATGCGG-GTGAAGATGGGATT-GT-ACGGAGGGAAGAAGTG 1302
| ||||| || || || |||| | | || |||||| || || | | || ||||| |||
Sbjct 1344 GTGCGGCACTTAGGCCTC-ATGCCGCG-GACGATGGG-TTAGTGA-GTAGAGAAGAGGTG 1399
Query 1303 GTGAGAGTGGTGAA-GGCACTGATGGAAGGTGAAGAGGGAAAAGCCA-T-AGGAAATAA- 1358
| |||||||| || || | |||||||||||||||| || |||| | | ||||| ||
Sbjct 1400 GCAAGAGTGGTAAAAGG-ATTGATGGAAGGTGAAGAAGGCAAAGG-AGTGAGGAAC-AAG 1456
Query 1359 AGTGAAGGAGTTGAAAGAAGGAG-TTGTTAGAGTCTTG 1395
| ||||||| ||||| |||| || |||| || || |||
Sbjct 1457 A-TGAAGGAATTGAAGGAAGCAGCTTGT-AGGGTGTTG 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63267896945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5