BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01510.1 Length=2155 Score E Sequences producing significant alignments: (Bits) Value Ahg311286 jgi|Araly1|311286|fgenesh1_pm.C_scaffold_1000066 3277 0.0 > Ahg311286 jgi|Araly1|311286|fgenesh1_pm.C_scaffold_1000066 Length=3747 Score = 3277 bits (1774), Expect = 0.0 Identities = 1863/1907 (98%), Gaps = 2/1907 (0%) Strand=Plus/Plus Query 7 AGCGAGAAGAAGGAGGAGATGAGCAAGATCCGTTCGTCTGCGACAATGCCACATCGCGAC 66 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 976 AGCGAGAAGAAGAAGGAGATGAGCAAGATCCGTTCGTCTGCGACAATGCCACATCGCGAC 1035 Query 67 CAGCCGTCACCGGCGTCGCCTCACGTCGTTACACTCAACTGTATAGAGGATTGTGCGCTC 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1036 CAGCCGTCACCGGCGTCGCCTCACGTCGTTACACTCAACTGTATAGAGGATTGTGCGCTC 1095 Query 127 GAGCAAGACTCCCTCGCCGGCGTTGCTGGTGTCGAATACGTCCCGCTCAGCCGCATCGCC 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1096 GAGCAAGACTCCCTCGCCGGCGTTGCTGGTGTCGAATACGTCCCGCTCAGCCGCATCGCC 1155 Query 187 GATGGTAAGATCGAGTCCGCCACCGCCGTTCTCCTCCATTCCCTCGCGTATCTTCCACGA 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1156 GATGGTAAGATCGAGTCCGCCACCGCCGTTCTCCTCCATTCCCTCGCGTATCTTCCACGA 1215 Query 247 GCAGCTCAACGCCGACTCCGTCCTCACCAGCTCATTCTCTGCCTTGGCTCTGCTGATCGC 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1216 GCAGCTCAACGCCGACTCCGTCCTCACCAGCTCATTCTCTGCCTTGGCTCTGCTGATCGC 1275 Query 307 GCTGTCGATTCGACTCTCGCCGCCGACCTAGGTCTCCGACTTGTCCATGTAGATACTTCA 366 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1276 GCTGTCGATTCGACTCTCGCCGCCGACCTAGGTCTCCGACTTGTCCATGTCGATACTTCC 1335 Query 367 CGAGCCGAGGAAATCGCGGATACCGTCATGGCGCTCATCCTTGGACTCCTTCGACGGACG 426 |||||||||||||||||||| || || ||||||||||||||||||||||||||||||||| Sbjct 1336 CGAGCCGAGGAAATCGCGGACACTGTAATGGCGCTCATCCTTGGACTCCTTCGACGGACG 1395 Query 427 CATTTACTCTCGCGACACGCTCTATCGGCGTCTGGTTGGCTCGGATCGCTTCAGCCTCTT 486 ||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||| Sbjct 1396 CATTTACTCTCGCGACACGCTTTATCGGCGTCTGGATGGCTTGGATCGCTTCAGCCTCTT 1455 Query 487 TGCCGGGGAATGAGACGGTGCCGTGGTATGGTTTTGGGTATCGTTGGCAGATCTGTATCG 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1456 TGCCGGGGAATGAGACGGTGCCGTGGTATGGTTTTGGGTATCGTTGGCAGATCTGTGTCT 1515 Query 547 GCTCGGTATTTAGCTAGTAGAAGCTTGGCTTTCAAGATGAGTGTGCTCTACTTCGATGTC 606 ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1516 GCTCGGTATTTGGCTAGTAGAAGCTTAGCTTTCAAGATGAGTGTGCTCTACTTCGATGTC 1575 Query 607 CCAGAGGGAGATGAAGAACGAATCAGGCCCTCGAGATTCCCACGTGCTGCTCGAAGAATG 666 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 1576 CCAGAGGGAGATGAAGATCGAATCAGGCCCTCGAGATTCCCACGTGCTGCTCGGAGAATG 1635 Query 667 GATACATTGAATGATCTTCTAGCAGCAAGTGATGTCATTTCGCTACATTGTGCATTAACA 726 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 1636 GATACATTGAATGATCTTCTAGCAGCAAGTGATGTAATTTCGCTTCATTGTGCATTAACA 1695 Query 727 AATGACACGGTTCAGATACTCAATGCAGAGTGTTTGCAGCATATAAAACCTGGGGCTTTT 786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1696 AATGACACGGTTCAGATACTCAATGCAGAGTGTTTGCAGCATATAAAACCTGGGGCTTTT 1755 Query 787 CTTGTAAATACTGGAAGCTGCCAGCTGTTGGATGATTGTGCTGTGAAACAACTTCTAATT 846 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1756 CTTGTAAATACTGGAAGCTGCCAGCTATTGGATGATTGTGCTGTGAAACAACTTCTAATT 1815 Query 847 GATGGCACTATAGCTGGCTGCGCCCTTGACGGTGCTGAAGGTCCACAATGGATGGAAGCA 906 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1816 GACGGCACTATAGCTGGCTGCGCCCTTGACGGTGCTGAAGGTCCACAATGGATGGAAGCA 1875 Query 907 TGGGTGAAGGAAATGCCAAATGTGTTAATTCTACCTCGCAGTGCAGATTACAGTGAGGAA 966 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1876 TGGGTGAAGGAAATGCCAAATGTGTTAATTCTACCTCGCAGCGCAGATTACAGTGAGGAA 1935 Query 967 GTATGGATGGAGATAAGGGAGAAGGCTATCTCTATCTTGCATTCATTTTTCTTAGATGGT 1026 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1936 GTATGGATGGAGATAAGGGAGAAGGCCATCTCTATCTTGCATTCATTTTTCTTAGATGGT 1995 Query 1027 GTAATTCCAAGTAACACTGTTTCTGATGAGGAAGTTGAGGAAAGTGAAGCAAGTGAAGAA 1086 || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1996 GTCATCCCAAGTAACACTGTTTCTGACGAGGAAGTTGAGGAAAGTGAAGCAAGTGAAGAA 2055 Query 1087 GAAGAACAATCACCTAGCAAACACGAGAAATTAGCAATAGTGGAATCCACCAGTAGGCAA 1146 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2056 GAAGAACAATCACCTATCAAACACGAGAAATTAGCAATAGTGGAATCCACCAGTAGGCAA 2115 Query 1147 CAGGGAGAAAGTACTCTCACCAGCACTGAGATCGTACGTAGAGAGGCTAGTGAGTTAAAA 1206 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2116 CAGGGAGAAAGTACTCTCACCAGCACTGAGATCGTTCGTAGAGAGGCTAGTGAGTTAAAG 2175 Query 1207 GAATCTCTGAGCCCTGGTCAGCAACACGTTTCTCAAAATACTGCCGTAAAACCTGAAGGA 1266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2176 GAATCTCTGAGCCCTGGTCAGCAACACGTTTCTCAAAATACTGCCGTAAAACCTGAAGGA 2235 Query 1267 AGACGTAGCAGATCCGGTAAGAAAGCCAAAAAGAGACATTCACAGCAAAAATACATGCAA 1326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2236 AGACGTAGCAGATCCGGTAAGAAAGCCAAAAAGAGACATTCACAGCAAAAATACATGCAA 2295 Query 1327 AAAACGGATGGTTCCTCAGGGTTAAATGAAGAAAGTACTTCACGAAGAGATGATATTGCT 1386 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2296 AAAGCGGAGGGTTCCTCAGGGTTAAATGAAGAAAGTACTTCACGAAGAGATGATATTGCT 2355 Query 1387 ATGAGTGACACAGAAGAAGTATTAAGTTCCAGTTCTAGATGTGCTTCTCCTGAAGATTCC 1446 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2356 ATGAGTGACACGGAAGAAGTATTAAGTTCCAGTTCTAGATGTGCTTCTCCTGAAGATTCC 2415 Query 1447 AGAAGTAGGAAAACACCTCTTGAAGTAATGCAAGAGTCTTCCCCAAATCAGCTTGTAATG 1506 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2416 AGAAGTAGGAAAACACCTCTTGAAGTAATGCAAGAGTCTTCCCCAAGTCAGCTTGTAATG 2475 Query 1507 TCAAGTAAGAAGTTCATTGGAAAGTCAAGTGAGCTACTGAAAGATGGATATGTAGTAGCC 1566 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 2476 TCAAGTAAGAAGTTCATTGGAAAGTCAAGTGAGCTGCTGAAAGATGGATATGTTGTAGCC 2535 Query 1567 TTGTATGCGAAAGACCTCTCGGGCCTCCACGTTTCCAGGCAAAGAACGAAAAACGGTGGC 1626 || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 2536 TTATATGCGAAAGACCTCTCGGGCCTTCACGTTTCCAGGCAAAGAACGAAAAACGGGGGT 2595 Query 1627 TGGTTCCTCGATACTTTGTCCAATGTATCCAAACGAGATCCTGCTGCACAATTCATTATC 1686 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 2596 TGGTTCCTCGATACTTTGTCCAATGTATCCAAACGGGATCCTGCTGCACAATTCATCATC 2655 Query 1687 GCATACAGAAACAAGGACACTGTTGGTCT-GAGATCATTTGCTGCTGGTGGGAAGTTACT 1745 |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || Sbjct 2656 GCATACAGAAACAAGGACACTGTTGG-CTTGAGATCATTTGCTGCTGGTGGGAAGTTGCT 2714 Query 1746 GCAGATCAATAGAAGAATGGAGTTTGTGTTTGCTAGCCATAGTTTTGACGTGTGGGAGAG 1805 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2715 GCAGATCAATAGAAGAATGGAGTTTGTGTTTGCTAGCCATAGTTTTGACGTGTGGGAGAG 2774 Query 1806 TTGGAGTCTAGAAGGTTCTCTGGACGAATGTCGGCTTGTTAACTGCAGGAATTCCTCTGC 1865 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2775 TTGGAGTCTAGAAGGTTCTCTGGACGAATGCCGGCTTGTTAACTGCAGGAATTCCTCTGC 2834 Query 1866 GGTGTTGGACGTTCGTGTGGAGATATTGGCAATGGTAGGAGACGATG 1912 ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 2835 GGTGTTGGACGTTCGTGTGGAAATATTGGCAATGGTAGGAGACGATG 2881 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81094131605 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5