BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01540.2
Length=1920
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470125 jgi|Araly1|470125|fgenesh2_kg.1__79__AT1G01540.2 2713 0.0
Ahg902301 jgi|Araly1|902301|Al_scaffold_0004_2951 106 7e-22
> Ahg470125 jgi|Araly1|470125|fgenesh2_kg.1__79__AT1G01540.2
Length=1875
Score = 2713 bits (1469), Expect = 0.0
Identities = 1771/1908 (93%), Gaps = 56/1908 (3%)
Strand=Plus/Plus
Query 1 AAGCCTTTCTCTTTAAATTCGTTATCGttttttttattttatcaatttaatctttt---- 56
||||||||||||||||||||| | ||| ||| |||| |||||||||||||||||||
Sbjct 1 AAGCCTTTCTCTTTAAATTCG-T-TCG-TTTATTTACTTTATCAATTTAATCTTTTACAG 57
Query 57 tatttg--ttt--t-G-TT-C-T-TCCTCGATTCAACACTCGATGCTGTGACAAAGCCCA 107
|||||| ||| | | || | | | ||||||||||| ||||||| |||||||||| ||
Sbjct 58 TATTTGTTTTTCCTCGATTCCTTGTTTTCGATTCAACATTCGATGCGGTGACAAAGCACA 117
Query 108 GATTTTGGCCGGAAAGTTTTGTGTGTTTCCGGCGAAGA-ATGCGAAGAAACCGGAAGAAT 166
|||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||| |||
Sbjct 118 GATTTTGGCCGGAAAGTTTTGTGT-TTTCCGGCG-AGATATGCGAAGAAACCGGAATAAT 175
Query 167 CTGTAACGGAATCTAAGCTAAAAGTTAAAGTACGATGTCGGTGTACGACGCTGCTTTCCT 226
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 176 CTGTAACGGAATCTAAG-GAAAAGTTAAAGTACGATGTCGGTGTACGACGCTGCTTTCCT 234
Query 227 TAATACAGAGCTTTCGAAACCGACATCGATTTTTGGTCTCCGGCTATGGGTCGTGATCGG 286
|| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 235 AAACACTGAGCTTTCGAAACCGACATCGATCTTTGGTCTCCGGCTATGGGTCGTTATCGG 294
Query 287 AATCTTACTTGGATCTCTAATTGTCATCGCACTCTTTCTTCTCTCCCTCTGCTTAACTTC 346
||||||||| ||||||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 295 AATCTTACTCGGATCTCTAATTGTCATTGCCCTCTTTCTTCTCTCCCTCTGCCTAACTTC 354
Query 347 TCGCCGGAAAAATCGAAAGCCGAGAGCCGATTTCGCCTCCGCCGCCATCGCTACACCGCC 406
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 355 TCGCCGGAAAAATCGAAAGCCGAGAGCCGATTTCGCTTCCGCCGCCATCGCTACGCCGCC 414
Query 407 GATTTCAAAGGAGATTAAAGAGATCGTTCCGGCGCAGAATCAGTCTGTTCCGGCGGAGAT 466
|||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 415 GATTTCTAAGGAGATTAAAGAGATCGTTCCTGCGCAGACGCAGTCTGTTCCGGCGGAGAT 474
Query 467 CCAGGTCGATATCGGGAAGATCGAGCATCGAGTGGTGTTTTCAGATCGAGTGTCGAGTGG 526
|||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||
Sbjct 475 CCAGGTCGATATCGGGAAGATCGAACATAGAGTGGTGTTTTCAGATCGAGTATCGAGTGG 534
Query 527 TGAGAGTAGAGGAACAGCGAGTGCAAGTGAAACGGCGTCGTATTCCGGTAGCGGGAATTG 586
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 535 TGAGAGTAGAGGAACAGCGAGTGCAAGTGAAACGGCGTCGTATTCCGGCAGCGGAAATTG 594
Query 587 TGGGCCGGAGGTGTCGCATCTTGGATGGGGCCGATGGTATACTCTGAGAGAGCTTGAAGC 646
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 595 TGGGCCGGAGGTTTCGCATCTTGGATGGGGACGATGGTATACTCTGAGAGAGCTTGAAGC 654
Query 647 GGCCACGAATGGGCTTTGTGAAGAGAATGTAATCGGAGAAGGTGGTTACGGGATTGTGTA 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GGCCACGAATGGGCTTTGTGAAGAGAATGTAATCGGAGAAGGTGGTTACGGGATTGTGTA 714
Query 707 TCGTGGCATTTTAACTGATGGAACCAAAGTCGCCGTCAAGAACTTGCTTAACAATAGGGG 766
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 715 TCGTGGCGTTTTAACTGATGGAACCAAAGTCGCTGTCAAGAACTTGCTTAACAATAGGGG 774
Query 767 TCAAGCAGAGAAGGAATTCAAAGTAGAAGTGGAAGTCATTGGGCGAGTACGACACAAGAA 826
|||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 775 CCAAGCAGAGAAGGAATTCAAAGTAGAAGTGGAGGTCATTGGGCGCGTACGGCACAAGAA 834
Query 827 TCTTGTTAGGCTTTTAGGGTATTGCGTGGAAGGTGCATACAGGATGCTCGTGTATGACTT 886
||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 835 TCTCGTTAGGCTTTTAGGGTATTGTGTCGAAGGTGCATACAGGATGCTCGTGTATGACTT 894
Query 887 TGTCGACAATGGTAATTTGGAGCAATGGATTCACGGTGATGTTGGCGATGTCAGCCCGCT 946
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 TGTCGATAATGGTAATCTGGAGCAATGGATTCACGGTGATGTTGGCGATGTCAGCCCGCT 954
Query 947 AACTTGGGATATACGTATGAATATTATACTGGGGATGGCCAAAGGATTGGCGTATCTACA 1006
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 955 TACTTGGGATATCCGTATGAATATTATACTCGGGATGGCCAAAGGATTGGCGTATCTACA 1014
Query 1007 CGAGGGTCTTGAGCCAAAAGTTGTTCATCGGGATATTAAATCAAGCAATATCTTACTTGA 1066
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1015 CGAGGGTCTTGAGCCAAAAGTTGTTCATCGGGATATAAAATCAAGCAATATCTTGCTTGA 1074
Query 1067 TCGCCAATGGAATGCTAAGGTTTCGGATTTTGGACTTGCTAAGCTCTTGGGGTCTGAGAG 1126
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1075 TCGCCAATGGAATGCTAAGGTTTCGGATTTTGGACTTGCTAAGCTCTTGGGTTCTGAGAG 1134
Query 1127 CAGTTATGTGACTACTCGTGTGATGGGAACTTTCGGTTATGTAGCACCAGAATACGCTTG 1186
||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1135 CAGTTATGTTACTACTCGTGTGATGGGAACTTTTGGTTATGTAGCACCGGAATATGCTTG 1194
Query 1187 CACCGGAATGTTAAACGAGAAGAGTGATATCTATAGCTTCGGAATACTAATCATGGAGAT 1246
||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 1195 CACTGGAATGTTAAACGAGAAGAGTGATATATATAGCTTCGGGATATTAATCATGGAGAT 1254
Query 1247 AATCACTGGAAGAAACCCGGTTGATTATAGTCGGCCTCAAGGAGAGACAAATCTAGTGGA 1306
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 AATCACAGGAAGAAACCCGGTTGATTATAGTCGGCCTCAAGGAGAGACAAATCTAGTGGA 1314
Query 1307 TTGGCTTAAATCAATGGTGGGAAACCGAAGATCAGAAGAAGTTGTTGATCCGAAAATACC 1366
|||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1315 TTGGCTGAAATCAATGGTAGGAAACCGAAGATCAGAAGAAGTAGTTGATCCGAAAATACC 1374
Query 1367 CGAACCACCATCCTC-AAAGGCTCTTAAA-CGAGTGTTGCTTGTAGCTTTGCGTTGTGTG 1424
|||||||||||||| |||| || ||||| || |||||||||||||| ||||||||||||
Sbjct 1375 TGAACCACCATCCTCCAAAG-CT-TTAAAACGGGTGTTGCTTGTAGCCTTGCGTTGTGTG 1432
Query 1425 GATCCTGATGCGAACAAGAGACCTAAAATGGGTCATATCATACATATGCTTGAAGCCGAA 1484
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 GATCCTGATGCAAACAAGAGACCTAAAATGGGTCATATCATACATATGCTTGAAGCCGAA 1492
Query 1485 GATCTACTCTATCGCGATGAACGCCGAACAACAAGGGACCATGGAAGCCGCGAGAGACAA 1544
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1493 GATCTACTCTATCGCGATGAACGCCGAACAACTAGGGACCATGGAAGCCGGGAGAGACAA 1552
Query 1545 GAGACAGCTGTGGTTGCTGCCGGTAGTGAAAGTGGTGAGAGCGGTTCACGGCATCATCAG 1604
||||||||||| |||||||| |||| |||||| || ||||||||||||||||||||| ||
Sbjct 1553 GAGACAGCTGTAGTTGCTGCGGGTAATGAAAGCGGCGAGAGCGGTTCACGGCATCATGAG 1612
Query 1605 CAAAAGCAAAGATGAAAAAAGAGAGTCACTTGGGTTAAGTGATTTCCACACGACCATTAT 1664
||||||| | ||||||||||||| ||| | | |||||||||
Sbjct 1613 CAAAAGCTAGGATGAAAAAAGAG---CAC-------A--------C-----GACCATTAT 1649
Query 1665 ATTTCA-tttttttttCCGGTATATTATTGTCTCACTTACATA-ATA-T-TTT-CATTCT 1719
|||||| |||||||||||||||||||||||||||||||||||| ||| | ||| ||||||
Sbjct 1650 ATTTCAATTTTTTTTTCCGGTATATTATTGTCTCACTTACATACATAATATTTTCATTCT 1709
Query 1720 TTGGCTCTTCGAGTCTTGGCCTTACGAAATTAACATTCTTCTTCTTTGTAACCTTTTGTC 1779
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1710 TTGGCTCTTCGAGTCTTGGCCTTACGAA-TTAACTTTCTTCTTCTTTGTAACCTTTTGTC 1768
Query 1780 AACGAT-CACATTCACATGTCACTTATTAGATATTGTAATATGTAATGTTTGGACCGACG 1838
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1769 AACGATGCACATTCACATGTCACTTACTAGATATTGTAATATGTAATGTTTGGACCGACC 1828
Query 1839 -TCGAAGCATAAGCAGGTGATTGGTCGATGGATCAAACTTATCGCTTT 1885
| |||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 1829 CT-GAAGCACGAGCACGAGATTGGTCGATGGATCAAACTTATCGCTTT 1875
> Ahg902301 jgi|Araly1|902301|Al_scaffold_0004_2951
Length=1470
Score = 106 bits (57), Expect = 7e-22
Identities = 240/325 (74%), Gaps = 26/325 (8%)
Strand=Plus/Plus
Query 603 CATCTTGGATGGGGCCGA-TGGTATACTCTGAGAGAGCTTGAAGC-GGCCACGAATGGGC 660
|||||||| ||||| | | |||| |||||| || || |||| ||| || || || |
Sbjct 490 CATCTTGGTTGGGGAC-ACTGGTTTACTCTTAGGGATCTTG-AGCTAGCTACCAA-CCGT 546
Query 661 TTTG-TGAAGAGAATGTAATCGGAGAAGGTGGTTACGGGA-TTGTGTATCGTGG-CATTT 717
|||| || || |||||| | ||||| |||||||| ||| | || ||| | || | |
Sbjct 547 TTTGCTGCAGTGAATGTGCTTGGAGAGGGTGGTTA-TGGAGTAGTTTATAGGGGTAAACT 605
Query 718 TAACTGATGGAACCAAAGTCGCCGTCAAGAA-CTTGCTTAACAA--TAGGGGTCAAGCAG 774
| | |||| ||| | || || || ||||| ||| || ||||| || ||| ||||| |
Sbjct 606 T-GTTAATGGTACCGAGGTTGCAGTAAAGAAGCTT-CTGAACAATCTA-GGG-CAAGCTG 661
Query 775 AGAAGGAA-TTCAAAGTAGAAGTGGAAGTC-ATTGGGCGA-GTACGACACAAGAATCTTG 831
|||||||| ||| |||||||| | || | ||||| | | || ||||||||||||||||
Sbjct 662 AGAAGGAATTTC-GGGTAGAAGTTG-AGGCTATTGGTC-ATGTTCGACACAAGAATCTTG 718
Query 832 TTAGGCTTTTAGGGTATTGCGTGGAAGGTG--CATACAGGATGCTCGTGTATGACTTTGT 889
||||||||||||| |||||| | || || | ||| | ||||||| || ||||| | |||
Sbjct 719 TTAGGCTTTTAGGATATTGCATAGAGGGAGTTCAT-C-GGATGCTTGTTTATGAGTATGT 776
Query 890 CGACAATGGTAATTTGGAGCAATGG 914
| | |||||| || || ||||||
Sbjct 777 TAATAGTGGTAACTTAGAACAATGG 801
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72142924030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5