BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01550.1 Length=1460 Score E Sequences producing significant alignments: (Bits) Value Ahg470124 jgi|Araly1|470124|fgenesh2_kg.1__78__AT1G01550.1 1975 0.0 > Ahg470124 jgi|Araly1|470124|fgenesh2_kg.1__78__AT1G01550.1 Length=1386 Score = 1975 bits (1069), Expect = 0.0 Identities = 1276/1373 (93%), Gaps = 26/1373 (2%) Strand=Plus/Plus Query 13 ATCTGCAGAAATACGGCAACTTTTGTGGTTAGTCATATAAGAACAACCGCGTTACAAACT 72 |||||||||||||||||||| |||||| |||||||||| ||||||| |||||| |||||| Sbjct 1 ATCTGCAGAAATACGGCAAC-TTTGTGTTTAGTCATATTAGAACAA-CGCGTTTCAAACT 58 Query 73 TCTCTCGTCTTTCCTGGAAATTTCTGTCCACAAATATT--A-GTCTTTAATTTTCGAAAC 129 |||||| ||||||||||||||| ||||||||||||||| | | |||||||||||| || Sbjct 59 TCTCTCATCTTTCCTGGAAATTCCTGTCCACAAATATTACACGCCTTTAATTTTCG--AC 116 Query 130 TTCTCTCAG--GCGAATTCAAGTTTCATAGTTTTGGTCTAGTTTTTGTCCACCGATCTAT 187 ||| |||| |||||||||||||||||| ||| ||||||||| ||||||| Sbjct 117 CTCTATCAGTCGCGAATTCAAGTTTCATA------GTC-----TTTGTCCACGGATCTAT 165 Query 188 CTCTTTAGTTGAAACTTATCAGAATGGCTCGTCCACAAGACCCTCCACGTGGTTTCTTCC 247 |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 166 CTCTTTAGTTGAAACTTATCTGAATGGCTCGTCCACAAGACCCTCCACGCGGTTTCTTCC 225 Query 248 CTTTTGGAAACCCCTTCAAAAATCTATCTTCGAAGAACTCGGTACTCTCCTCAAAGCTTC 307 ||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||||||| Sbjct 226 CTTTTGGAAACCCTTTCAAGAATCTATCTTCAAAGAACTCGGTACTCTCCCCAAAGCTTC 285 Query 308 TCCCACTCCTGAACAATTTTGAGACCAACTTAGCATCTTCTATTAGTAAGCTTGTCCCTA 367 || ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 286 TCTCACTCTTGAACAATTTTGAGACCAACTTAGCATCTTCTATTAGTAAGCTGGTCCCTA 345 Query 368 AGGAAAAGAGCGATATCCTGACTGTCTCATGGATGAAACAAGCTATGGAATCTCTTTGCG 427 ||||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||| Sbjct 346 AGGAAAAGAGCGAAATCCTGACTGTTTCATGGATGAAACAAGCCATGAAATCTCTTTGCG 405 Query 428 AGACACATAATGGTATCAAGACCCTTATAACCGATCTTGAGCTTCCTGTATCAGATTGGG 487 ||||||| ||||||||||||||||||||||||||||| ||||| || || |||||||||| Sbjct 406 AGACACACAATGGTATCAAGACCCTTATAACCGATCTAGAGCTGCCAGTTTCAGATTGGG 465 Query 488 AGGATAAATGGGTTGATGTCTATCTTGACATTAGTGTGAAGCTTCTTGATCTCTGCAATG 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 466 AGGATAAATGGGTTGATGTCTATCTTGACATTAGTGTGAAGCTTCTTGATCTCTGCAATG 525 Query 548 CCTTTAGCTCTGAGCTTACCCGTCTCAACCAAGGTCATCTCTTACTCCAGTTTGCTCTGC 607 |||||||||||||||| || ||||||||||| |||||||||||||||||||||||| ||| Sbjct 526 CCTTTAGCTCTGAGCTAACTCGTCTCAACCAGGGTCATCTCTTACTCCAGTTTGCTTTGC 585 Query 608 ATAACTTGGAGGCCAACTCTCCTCAGAATCTGTCGAAAGCTCAGTCATCACTAGACAGTT 667 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 586 ATAACTTGGAGGCAAACTCTCCTCAGAATCTGTCGAAAGCTCAATCATCACTAGACAGCT 645 Query 668 GGAAGCAACACATTGTCTCCAAGAACCCGAGAATAGAAAATTGCCGTGCAATCTTGAGCA 727 |||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||| Sbjct 646 GGAAGCAACACATTGTTTCCAAGAACCCAAGAATCGAAAATTGCCGCGCAATCTTGAGCA 705 Query 728 GCCTTGTTCAGACCTTGAATCTCCCCAAGGTGAAAAACTCGGCCAAAGGGAAAGTCTTGA 787 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 706 GCCTTGTTCAGACCTTGAATCTCCCCAAGGTGAAAAACTCGGCTAAAGGGAAAGTCTTGA 765 Query 788 TGAGAGCTCTATATGGTGTAAAGGTTAAGACCTTATACATCTCTGGTGTTTTTGCTGCAG 847 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 766 TGAGAGCTCTATACGGTGTAAAGGTTAAGACCTTATACATCTCTGGTGTTTTTGCTGCAG 825 Query 848 CGTTCTCAGGTTCATCGCAGAATCTGATGTACCTTACAGTCTCAAACGAGCTTCCATGGG 907 | |||||||||||||||||||||||||||||||| || |||||| ||||||| ||||||| Sbjct 826 CATTCTCAGGTTCATCGCAGAATCTGATGTACCTAACCGTCTCACACGAGCTCCCATGGG 885 Query 908 CACAATCATTCATGGAAGTGCAGAACACCATGAACGCAGAAATCAAGAACATATTTTTGT 967 ||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| | Sbjct 886 CACAATCCTTCATGGAAATGCAGAACACCATGAACGCGGAAATCAAGAACATATTTTTAT 945 Query 968 CAGACGGGTTAACGGTTCTGAAAGAGCTAGAGGCAGTTGCTTCAGGTGTCAAGAAACTCT 1027 |||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| Sbjct 946 CAGACGGGTTAACGGTTCTGAAAGAGCTCGAGGCAGTTGATTCAGGTGTTAAGAAACTCT 1005 Query 1028 ACCCTGCGATCCAACAAGGATCAATAGATCCCATATCGCTGCAGCCACTGAAGGACTCGG 1087 ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 1006 ACCCTGCGATCCAACAAGGATCAATAGATCCCATATCCCTGCAGCCACTGAGGGACTCGG 1065 Query 1088 TCACAGAATTATCGAATGGGATAGATCTTGTTTCGAAAGAAGTGGATTGTTTCTTCAAGA 1147 |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 1066 TCACAGAATTATCGAATGGGCTAGATCTTGTTTCGAAAGAAGTCGATTGTTTCTTCAAGA 1125 Query 1148 TTCTGTTATCGGGGAGAGACACATTACTAGAGAACCTAAGGTCGATGGGTGCATCAACCC 1207 |||||||| ||||| |||||||||||||||||||||| |||||||| ||||||||||||| Sbjct 1126 TTCTGTTAACGGGGCGAGACACATTACTAGAGAACCTCAGGTCGATAGGTGCATCAACCC 1185 Query 1208 TACAGGCAACATCGCCAAAAAAGGCTGCCGGAAAAAATTACAGAGGATTCTGATAAACTA 1267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1186 TACAGGCAACATCGCCAAAAAAGGCTGCCGGAAAAAATTACAGAGGATTCTGATAAACAA 1245 Query 1268 -TAAATGTTTGTACAGATGGTTTTACTTCAAGTGTTCCATCTTCTTGGTATTGAATGTAT 1326 || ||| |||| ||||||||| |||| ||||||||||||||||||||||||||||||| Sbjct 1246 GTAT-TGTGTGTATAGATGGTTTAACTTTAAGTGTTCCATCTTCTTGGTATTGAATGTAT 1304 Query 1327 TATTAGGT-TT-TTGTGCAATCGTAGTCGTTTGTATGAGATGCTTTGAAAGTA 1377 ||||| | || || | | || |||||||||||||||||||||||||||||| Sbjct 1305 TATTAT-TATTATTATT-AGTCTTAGTCGTTTGTATGAGATGCTTTGAAAGTA 1355 Score = 62.1 bits (33), Expect = 1e-08 Identities = 33/33 (100%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1400 TACCAACTTATCTATATATATTATGAATATCTT 1432 ||||||||||||||||||||||||||||||||| Sbjct 1354 TACCAACTTATCTATATATATTATGAATATCTT 1386 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54621411330 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5