BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G01600.1 Length=2163 Score E Sequences producing significant alignments: (Bits) Value Ahg918799 jgi|Araly1|918799|scaffold_100080.1 2835 0.0 > Ahg918799 jgi|Araly1|918799|scaffold_100080.1 Length=1705 Score = 2835 bits (1535), Expect = 0.0 Identities = 1654/1711 (97%), Gaps = 9/1711 (1%) Strand=Plus/Plus Query 187 AACAATAATAAAAGAGCTACATGGAAATATCCAATGCCATGCTTCTTGTAGCGATCGTAA 246 ||||||||||| ||||||||||||||||||||||||| |||||||| |||||| | |||| Sbjct 1 AACAATAATAAGAGAGCTACATGGAAATATCCAATGCGATGCTTCTCGTAGCGGTGGTAA 60 Query 247 CAGGGTATTGGCTATGGTTCAAGAGGATCTCACGGTGGCTAAAGGGTCCACGTGTCTGGC 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CAGGGTATTGGCTATGGTTCAAGAGGATCTCACGGTGGCTAAAGGGTCCACGTGTCTGGC 120 Query 307 CTCTGTTGGGTAGTCTTCCTGGTCTGATAGAGCAACGTGACAGGATGCATGAATGGATCA 366 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 121 CTCTGTTGGGTAGTCTTCCTGGTCTGATAGAGCAACGTGACAGAATGCATGAATGGATCA 180 Query 367 CCGAGAACCTTCGTGCGTGCGGCGGCACTTACCAGACTTGTATCTTTGCCGTGCCTTTCT 426 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 181 CCGAGAACCTCCGTGCGTGCGGTGGCACTTACCAGACTTGTATCTTTGCCGTGCCTTTCT 240 Query 427 TGGCTAAGAAGCAAGGTCTCGTGACTGTCACGTGTGACCCTAAGAATCTCGAACACATGC 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 TGGCTAAGAAGCAAGGTCTCGTGACTGTCACGTGTGACCCTAAGAATCTCGAACACATGC 300 Query 487 TCAAGACCCGGTTCGATAACTACCCTAAAGGTCCTACATGGCAATCCGTCTTCCACGATC 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TCAAGACCCGGTTCGATAACTACCCTAAAGGTCCTACATGGCAATCCGTCTTCCACGATC 360 Query 547 TCCTGGGTCAAGGTATTTTCAACTCCGACGGTGACACCTGGCTCTTCCAACGCAAAACCG 606 | || || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TTCTCGGCCAAGGTATTTTCAACTCCGACGGTGACACCTGGCTCTTCCAACGCAAAACCG 420 Query 607 CCGCTCTTGAATTCACAACAAGGACGTTGCGGCAAGCCATGGGTAGGTGGGTAAACCGAG 666 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 421 CCGCTCTTGAATTCACAACAAGGACGTTGCGGCAAGCCATGGGTAGATGGGTAAACCGAG 480 Query 667 GAATTAAGCTCCGGTTCTGTCCGATTCTTGCAACGGCTCAAGACAA-TGCAGAACCAGTT 725 ||||||| |||||||||||||| ||||||| ||||||||||| ||| | ||||||| ||| Sbjct 481 GAATTAAACTCCGGTTCTGTCCAATTCTTGAAACGGCTCAAGCCAAAT-CAGAACCGGTT 539 Query 726 GATCTCCAAGACTTAATACTACGGCTCACATTCGACAACATTTGCGGATTGGCGTTCGGT 785 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GATCTCCAAGACTTAATACTACGGCTCACATTCGACAACATTTGCGGATTGGCGTTCGGT 599 Query 786 AAGGACACACGAACCTGCGCACCGGGGCTTCCCGAGAATGGCTTTGCCTCGGCATTCGAT 845 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 600 AAGGATACACGAACCTGCGCACCGGGGCTTCCCGAGAACGGCTTTGCCTCGGCATTCGAT 659 Query 846 CGAGCCACCGAAGCCTCGCTTCAACGGTTTATCATACCGAAGTTTATGTGGAAGCTGAAG 905 |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 660 CGAGCCACTGAAGCCTCGCTTCAACGGTTTATCATACCGGAGTTTATGTGGAAGCTGAAG 719 Query 906 AAATGGCTTGGGCTCGGTTTAGAAGTAAGCTTGAGCCGAAGCTTAGGAGAAATCGATGAA 965 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 AAATGGCTTGGGCTCGGTTTAGAAGTAAGCTTGAGCCGAAGCTTAGGAGAAATCGATGAA 779 Query 966 TATCTT-GCTGCTGTTATAAATACACGTAAGCAAGAACTGATGAGTCAGCAAGAAAGTGG 1024 ||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 780 TAT-TTAGCTGCTGTTATAAATACACGTAAGCAAGAATTGATGAGTCAGCAAGAAAGTGG 838 Query 1025 AACCCACCAGAGACACGACGATCTCCTCTCGCGTTTCATGATGAAGAAAACAGAATCTTA 1084 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 839 AACCCACCAGAGACACGACGATCTCCTCTCGCGTTTCATGATGAAGAAAACCGAATCTTA 898 Query 1085 CAGTGACACGTTTCTCCAACACGTGGCGCTTAACTTTATCCTAGCTGGACGTGACACGTC 1144 ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 899 CAGTGACACGTTTCTCCAACAGGTGGCGCTTAACTTTATCCTTGCTGGACGTGACACGTC 958 Query 1145 ATCAGTTGCGCTGAGCTGGTTCTTCTGGCTTATCACGATGCATCCAACCGTCGAGGATAA 1204 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 959 ATCAGTTGCCCTGAGCTGGTTTTTCTGGCTTATCACGATGCATCCAACCGTCGAGGATAA 1018 Query 1205 AATCGTCCGCGAGATCTGCTCCGTCCTGATCGAGACACGTGGCACTGATGACGTCGCGTC 1264 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 1019 AATCGTCCGCGAGATCTGCTCCGTTCTGATCGAGACACGTGGCACTGATGACGTCACGTC 1078 Query 1265 GTGGACTGAGGAGCCTCTAGGGTTCGACGAAATCGACCGTTTGGTTTACCTGAAGGCGGC 1324 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1079 TTGGACTGAGGAGCCTCTAGGGTTCGACGAAATCGACCGTTTGGTTTACCTGAAGGCGGC 1138 Query 1325 GATCTCGGAGACGCTCAGGCTTTACCCATCGGTGCCGGAAGATTCAAAACACGTCGAGAA 1384 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1139 GATCTCGGAGACGCTCAGGCTTTACCCATCGGTGCCGGAAGATTCGAAACACGTCGAGAA 1198 Query 1385 CGACGACGTTTTACCAGATGGGACCTTCGTTCCGGCGGGATCATCGGTGACGTACTCGAT 1444 ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1199 CGACGACGTTTTACCGGACGGGACTTTCGTTCCGGCGGGATCATCGGTGACGTACTCGAT 1258 Query 1445 TTACGCGGCGGGGAGGATGAAGTCGACTTGGGGAGAAGATTGTCTGGAATTCAATCCGGA 1504 ||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||| Sbjct 1259 TTACGCGGCGGGGAGGATGAAATCGACTTGGGGAGAAGATTGTCTGGAATTTAACCCGGA 1318 Query 1505 GAGATGGATTTCTCCGATCGACGGAAAATTTATCAATCACGATCAATATCGGTTCGTGGC 1564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1319 GAGATGGATTTCTCCGATCGACGGAAAATTTATCAATCACGATCAATATCGGTTCGTGGC 1378 Query 1565 GTTCAATGCTGGACCAAGGATCTGCTTGGGGAAAGATCTGGCGTATCTTCAGATGAAAAC 1624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1379 GTTCAATGCTGGACCAAGGATCTGCTTGGGGAAAGATCTGGCGTATCTTCAGATGAAAAC 1438 Query 1625 AATAGCGGCAGCGGTGCTTCTCCGTCACCGGCTTACGGTGGTTCCGGGACATAAAGTGGA 1684 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 AATAGCGGCGGCGGTGCTTCTCCGTCACCGGCTTACGGTGGTTCCGGGACATAAAGTGGA 1498 Query 1685 GCAGAAGATGTCGTTGACGCTATTTATGAAGAACGGACTTCTGGTGAATCTGTATAAGAG 1744 |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 1499 GCAGAAGATGTCGTTGACGCTATTTATGAAGAACGGACTTCTGGTGAATCTGCACAAGAG 1558 Query 1745 AGATCTCCAAGGAATCATAAAGAGTCTAGTGGTGAAGAAGAGCGACGGTGTC-TCTAACG 1803 || |||||||| ||||| |||||||||||||||||||||||||||||||| || |||| Sbjct 1559 GGACCTCCAAGGGATCATGGAGAGTCTAGTGGTGAAGAAGAGCGACGGTGTCGTC-AACG 1617 Query 1804 GTCAATGTAACGGCGTTATTGGTGAAGGCGTCGCCGTTTACTTAAATACGGGAGTTGCAG 1863 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1618 GTAAATGTAACGGCGTTATTGGTGAAGGCGTCGCCGTTTACTTAAATACGGGAGTTGCGG 1677 Query 1864 TGGTTTAACAAGGCCAATCACGTCCCTGATT 1894 |||||||| ||||||||||||| |||||| Sbjct 1678 TGGTTTAA---GGCCAATCACGTCTCTGATT 1705 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81398853565 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5