BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01610.1
Length=1856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918798 jgi|Araly1|918798|scaffold_100079.1 2573 0.0
Ahg490527 jgi|Araly1|490527|fgenesh2_kg.6__3661__AT4G00400.1 1362 0.0
> Ahg918798 jgi|Araly1|918798|scaffold_100079.1
Length=1549
Score = 2573 bits (1393), Expect = 0.0
Identities = 1493/1542 (97%), Gaps = 4/1542 (0%)
Strand=Plus/Plus
Query 70 ATTCGCCGCAAG-AAAGATGTCTCCGGCGAAGAAGAGCCGAAGTTTTCCTCCGATAAGCG 128
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 ATTCGCCGCAAGAAAACATGTCTCCGGCGAAGAAGAGCCGAAGTTTTCCTCCGATAAGCG 63
Query 129 AGTGTAAAAGCAGAGAGTATGATTCGATCGCTGCGGATCTCGACGGGACTCTGCTTCTGT 188
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 64 AGTGTAAAAGCAGAGAGTATGATTCGATCGCTGCGGATCTCGACGGGACTCTGCTTCTCT 123
Query 189 CAAGAAGCTCTTTCCCTTACTTCATGCTGGTGGCCATTGAAGCAGGTAGTCTCTTCCGTG 248
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 124 CAAGAAGCTCTTTCCCTTACTTCATGCTCGTCGCCATTGAAGCAGGTAGTCTCTTCCGTG 183
Query 249 GATTGATCCTTCTTCTTTCTCTTCCCATCGTCATCATCGCTTATCTCTTCGTCTCCGAAT 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GATTGATCCTTCTTCTTTCTCTTCCCATCGTCATCATCGCTTATCTCTTCGTCTCCGAAT 243
Query 309 CTCTCGGAATCCAAATCCTTATCTTCATCTCCTTCGCCGGTATCAAGATCAAGAACATCG 368
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||
Sbjct 244 CTCTCGGAATCCAAATCCTTATCTACATCTCCTTCGCCGGCATCAAAATCAAGAACATCG 303
Query 369 AACTCGTCTCTCGCGCCGTTCTTACACGGTTTTACGCGGCGGATGTGAGGAAAGATAGTT 428
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 304 AACTCGTCTCTCGCGCCGTTCTTCCACGGTTTTACGCGGCGGATGTGAGGAAAGATAGTT 363
Query 429 TTGAGGTGTTTGATAAATGTAAGAAGAGGAAAGTAGTGGTGACTGCGAATCCGATAGTGA 488
||||||||||||||||||| |||| | | ||||| ||||| |||||||||||||||||||
Sbjct 364 TTGAGGTGTTTGATAAATGCAAGA-G-G-AAAGTGGTGGTTACTGCGAATCCGATAGTGA 420
Query 489 TGGTTGAGCCATTCGTCAAAGACTATTTGGGAGGAGATAAAGTTTTGGGAACAGAGATTG 548
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGTGGAGCCATTCGTCAAGGACTATTTGGGAGGAGATAAAGTTTTGGGAACAGAGATTG 480
Query 549 AAGTTAACCCCAAAACGATGAAAGCTACTGGTTTTGTGAAAAAGCCTGGTGTTCTTGTTG 608
|||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 481 AAGTTAACCCCAAAACCATGAAAGCCACTGGGTTTGTTAAAAAGCCTGGTGTTCTTGTTG 540
Query 609 GTGATCTCAAGAGATTAGCCATCTTGAAAGAGTTCGGCGATGACTCACCGGATCTTGGCC 668
||||| | ||||||||||| |||||||||||||||||||| || |||||||||||||| |
Sbjct 541 GTGATTTGAAGAGATTAGCAATCTTGAAAGAGTTCGGCGAAGAATCACCGGATCTTGGAC 600
Query 669 TCGGTGACCGCACCTCCGATCACGATTTCATGTCCATTTGCAAGGAAGGTTACATGGTGC 728
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCGGTGACCGGACCTCCGATCACGATTTCATGTCCATTTGCAAGGAAGGTTACATGGTGC 660
Query 729 ATGAGACCAAATCAGCCACAACAGTCCCTATAGAGAGTCTCAAGAACCGCATAATCTTCC 788
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 ATGAGACCAAATCAGCCACAACAGTCCCTATAGAGCGTCTCAAGAACCGCATAATCTTCC 720
Query 789 ATGATGGCCGTCTTGTCCAACGTCCGACCCCATTAAACGCCTTAATCATTTACCTTTGGC 848
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 721 ACGATGGCCGTCTTGTCCAACGTCCGACGCCATTAAACGCCTTAATCATTTACCTTTGGC 780
Query 849 TTCCTTTCGGCTTCATGCTCTCTGTCTTCCGCGTCTACTTCAACCTCCCTTTACCCGAAC 908
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 TTCCTTTCGGCTTCATGCTCTCTATCTTCCGCGTCTACTTCAACCTCCCTTTACCCGAAC 840
Query 909 GCTTCGTCCGCTACACTTACGAGATCCTCGGCATTCACCTCACAATCCGTGGCCACCGTC 968
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GCTTCGTTCGCTACACTTACGAGATCCTCGGCATTCACCTCACAATCCGTGGCCACCGTC 900
Query 969 CTCCACCTCCTTCCCCCGGAAAACCTGGAAACCTCTACGTTCTCAACCACCGCACCGCCC 1028
|||| |||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct 901 CTCCCCCTCCTTCCCCCGGCAAACCTGGAAACCTCTACGTCCTTAACCACCGCACCGCCC 960
Query 1029 TTGACCCCATTATCATCGCCATTGCTCTCGGCCGTAAGATCACATGTGTCACTTATAGTG 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTGACCCCATTATCATCGCCATTGCTCTCGGCCGTAAGATCACATGTGTCACTTATAGTG 1020
Query 1089 TCTCTCGCCTCTCCCTGATGCTCTCACCCATTCCTGCTGTTGCTCTGACCCGAGACCGTG 1148
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1021 TCTCTCGCCTCTCCCTGATGCTCTCACCCATCCCTGCTGTTGCTCTGACCCGAGACCGTG 1080
Query 1149 TCGCTGACGCAGCCCGCATGAGGCAACTCCTCGAGAAAGGTGATTTGGTGATCTGTCCTG 1208
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1081 TCGCTGATGCAGCCCGCATGAGACAACTCCTCGAGAAAGGTGATTTGGTGATCTGTCCTG 1140
Query 1209 AAGGCACAACGTGTAGAGAACCATATCTACTAAGGTTCAGTGCTCTATTTGCAGAGCTGA 1268
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1141 AAGGCACAACGTGTAGAGAACCATATCTACTAAGATTCAGTGCTCTATTTGCGGAGCTGA 1200
Query 1269 GCGACCGGATCGTGCCTGTGGCCATGAACTGCAAGCAAGGGATGTTCAACGGGACGACAG 1328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GCGACCGGATCGTGCCTGTGGCCATGAACTGCAAGCAAGGGATGTTCAACGGGACGACAG 1260
Query 1329 TTAGAGGTGTGAAATTCTGGGATCCGTACTTCTTCTTCATGAACCCCCGACCTAGCTACG 1388
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1261 TAAGAGGTGTGAAATTCTGGGATCCGTACTTCTTCTTCATGAACCCTCGACCTAGCTACG 1320
Query 1389 AGGCCACTTTCTTGGACCGTTTGCCCGAAGAAATGACGGTAAACGGTGGTGGCAAGACTC 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 AGGCCACTTTCTTGGACCGTTTGCCCGAAGAAATGACGGTAAACGGTGGTGGCAAGACTC 1380
Query 1449 CTTTTGAGGTGGCTAATTACGTTCAGAAGGTGATCGGTGGAGTTTTGGGGTTCGAATGTA 1508
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1381 CTTTTGAGGTGGCTAATTACGTTCAGAAGGTGATCAGTGGAGTTTTGGGGTTCGAATGCA 1440
Query 1509 CTGAACTTACAAGGAAGGATAAGTATCTGTTGCTTGGAGGCAACGACGGAAAGGTTGAGT 1568
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1441 CTGAACTCACAAGGAAGGATAAGTATCTGTTGCTTGGAGGCAACGATGGAAAGGTTGAGT 1500
Query 1569 CTATCAATAAGACCAAGTCCATGGAGTAATAATCCAGCTAGT 1610
||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1501 CTATCAATAAGACCAAGTCCACGGAGTAATAATCCAGCTAGT 1542
> Ahg490527 jgi|Araly1|490527|fgenesh2_kg.6__3661__AT4G00400.1
Length=1804
Score = 1362 bits (737), Expect = 0.0
Identities = 1256/1506 (83%), Gaps = 37/1506 (2%)
Strand=Plus/Plus
Query 86 ATGTCTCCGGCGAAGAAGAGCCGAAGTTTTCCTCCGATAAGC-GAGTGTAAAAG-CAGAG 143
|||||||| | ||||||||| | || |||||||||||||| | || || | || | |||
Sbjct 73 ATGTCTCCCGAGAAGAAGAGTCAAAATTTTCCTCCGATAA-CGGAATG-CAGAGACGGAG 130
Query 144 AGTATGATTCGATCGCTGCGGATCTCGACGGGACTCTGCTTCTGTCAAGAAGCTCTTTCC 203
|||| ||||||||||| || ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 131 AGTACGATTCGATCGCCGCCGATCTCGACGGGACTCTGCTTCTCTCAAGAAGCTCGTTCC 190
Query 204 CTTACTTCATGCTGGTGGCCATTGAAGCAGGTAGTCTCTTCCGTGGATTGATCCTTCTTC 263
||||||||||||| || ||| ||||||| || || || ||||||||| | ||||| ||||
Sbjct 191 CTTACTTCATGCTCGTCGCCGTTGAAGCTGGAAGCCTTTTCCGTGGACTAATCCTCCTTC 250
Query 264 TTTCTC-TTCCCA-TCGTCATCATCGCTTATCTCTTCGTCTCCGAATCTCTCGGAATCCA 321
|||| || ||| |||||||| | |||| || ||||| ||||||||||| ||||||||
Sbjct 251 --TCTCGTTACCATTCGTCATCGTTTCTTACCTATTCGTATCCGAATCTCTTGGAATCCA 308
Query 322 AATCCTTATCTTCATCTCCTTCGCCGGTATCAAGAT-CAAGAACATCGAACTCGTCTCTC 380
||||| ||||||||||||||||| ||| |||| || | | | ||||||||||||||||
Sbjct 309 CATCCTCATCTTCATCTCCTTCGCTGGTCTCAAAATCCGCG-ATATCGAACTCGTCTCTC 367
Query 381 GCGCCGTTCTTACACGGTTTTACGCGGCGGATGTGAGGAAAGATAGTTTTGAGGTGTTTG 440
|||| |||||| |||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 368 GCGCAGTTCTTCCACGGTTTTATGCGGCGGATGTGAGGAAAGACAGTTTTGATGTGTTTG 427
Query 441 ATAAATGTAAGAAGAGGAAAGTAGTGGTGACTGCGAATCCGATAGTGATGGTTGAGCCAT 500
|||| ||| ||||||||||| || ||||| |||||||||||||||||||| ||| | |
Sbjct 428 ATAAGTGT---AAGAGGAAAGTGGTAGTGACGGCGAATCCGATAGTGATGGTGGAGGCGT 484
Query 501 TCGTCAAAGACTAT-TTGGGAGGAGATAAAGTTTTGGGAACAGAGATTGAAGTTAACCCC 559
| || || || ||| || ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 485 TTGTGAAGGATTATCTT-GGAGGTGATAAAGTTTTGGGAACAGAGATTGAAGTCAACCCC 543
Query 560 AAAACGA-TGAAAGCTACTGGTTTTGTGAAAAAGCCTGGTGTTCTTGTTGGTGATCTCAA 618
||| | | | | ||| ||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 544 AAATCCAAT-AGAGCCACTGGATTTGTGAAGAAGCCTGGTGTTCTTGTTGGTGATCTTAA 602
Query 619 GAGATTAGCCATCTTGAAAGAGTTCGGCGATGACTCACCGGATCTTGGCCTCGGTGACCG 678
||| ||||||| ||||||||||| || || | ||||| ||||| ||||||||||| ||
Sbjct 603 GAGGCTAGCCATTTTGAAAGAGTTTGGTGACAAATCACCCGATCTCGGCCTCGGTGATCG 662
Query 679 CACCTCCGATCACGATTTCATGTCCATTTGCAAGGAAGGTTACATGGTGCATGAGACCAA 738
||||| |||||||||||||||||| | |||||| |||| |||||||| |||| || |||
Sbjct 663 AACCTCTGATCACGATTTCATGTCCCTCTGCAAGAAAGGCTACATGGTTCATGCGAGCAA 722
Query 739 ATCAGCCACAACAGTCCCTATAGAGA-GTCTCAAGAACCGCATAATCTTCCATGATGGCC 797
|||||||||||| | || | ||| | || | |||||||| ||| ||||||| || || |
Sbjct 723 GTCAGCCACAACAATTCCAAAAGA-ACGTTTAAAGAACCGTATAGTCTTCCACGACGGGC 781
Query 798 GTCTT-GTC-CAACGTCCGAC-CCCATTAAACGCC-TTAATCATTTACCTTTGGCTTCC- 852
|| || | | |||||||| || ||| ||||||||| ||| ||| ||||| ||||||||
Sbjct 782 GT-TTAG-CGCAACGTCCAACGCCC-TTAAACGCCATTA-TCACATACCTATGGCTTCCC 837
Query 853 TTTCGGCTTCATGCTCTCTGTC-TTCCGCGTCTACTTCAACCTCCCTTTACCCGAACGCT 911
||| || ||||| ||||| || ||| ||||||||||||||||||||||||| |||||||
Sbjct 838 TTT-GGTTTCATACTCTCCATCATTC-GCGTCTACTTCAACCTCCCTTTACCTGAACGCT 895
Query 912 TCGTCCGCTACACTTACGAGATCCTCGGCATTCACCTCACAATCCGTGGCCACCGTCCTC 971
| ||||| ||||| |||||||| ||||| || ||| | || || |||||||| |||||||
Sbjct 896 TTGTCCGTTACACCTACGAGATTCTCGGGATCCACTTAACCATTCGTGGCCATCGTCCTC 955
Query 972 CACCTCCTTCCCCCGGAAAACCTGGAAACCTCTACGTTCTCAACCACCGCACCGCCCTTG 1031
|||||||||||||||||| | ||| |||||||| || || |||||||| ||||| ||||
Sbjct 956 CACCTCCTTCCCCCGGAACTCTTGGCAACCTCTATGTCCTTAACCACCGTACCGCGCTTG 1015
Query 1032 ACCCCATTATCATCGCCATTGCTCTCGGCCGTAAGATCACATGTGTCACTTATAGTGTCT 1091
| ||||| ||| | ||||||||||| || || |||||| ||||| ||||| |||||||
Sbjct 1016 ATCCCATCATCGTTGCCATTGCTCTTGGACGCAAGATCTGTTGTGTTACTTACAGTGTCT 1075
Query 1092 CTCGCCTCTCCCTGATGCTCTCACCCATTCCTGCTGTTGCTCTGACCCGAGACCGTGTCG 1151
|||| |||||||| ||||| || || |||||||||||||| || ||||| |||||||||
Sbjct 1076 CTCGTCTCTCCCTTATGCTTTCTCCTATTCCTGCTGTTGCCCTCACCCGTGACCGTGTCA 1135
Query 1152 CTGACGCAGCCCGCATGAGGCAACTCCTCGAGAAAGGTGATTTGGTGATCTGTCCTGAAG 1211
| || || ||| |||||| |||| ||||||||||| || |||||||| ||||| ||||
Sbjct 1136 CCGATGCTGCCAACATGAGAAAACTTCTCGAGAAAGGCGACTTGGTGATATGTCCGGAAG 1195
Query 1212 GCACAACGTGTAGAGAACCA-TATCTACTAAGGTTCAGTGCTCTATT-TGCAGAGCTGAG 1269
|||||||||| |||||| | ||||| || || || || |||||||| | ||||||| ||
Sbjct 1196 GCACAACGTGCAGAGAAG-AGTATCTTCTGAGATTTAGCGCTCTATTCT-CAGAGCTTAG 1253
Query 1270 CGACCGGATCGTGCCTGTGGCCATGAACTGCAAGCAAGGGATGTTCAACGGGACGACAGT 1329
|||||||| ||||| || || |||||||| || ||||| |||||||||||||| |||||
Sbjct 1254 TGACCGGATTGTGCCAGTAGCGATGAACTGTAAACAAGGAATGTTCAACGGGACCACAGT 1313
Query 1330 TAGAGGTGTGAAATTCTGGGATCCGTACTTCTTCTTCATGAACCCCCGACCTAGCTACGA 1389
|| |||||||| |||||||| || |||||||| ||||||||||| |||| ||||| ||
Sbjct 1314 GAGGGGTGTGAAGTTCTGGGACCCTTACTTCTTTTTCATGAACCCAAGACCAAGCTATGA 1373
Query 1390 GGCCACTTTCTTGGACCGTTTGCCCGAAGAAATGACGGTAAACGGTGGTGGCAAGACTCC 1449
|||||||||||||| |||||||| ||||||||||| || |||||||| |||||||||||
Sbjct 1374 AGCCACTTTCTTGGATCGTTTGCCTGAAGAAATGACTGTCAACGGTGGCGGCAAGACTCC 1433
Query 1450 TTTTGAGGTGGCTAATTACGTTCAGAAGGTGATCGGTG-GAGTTTTGGGGTTCGAATGTA 1508
| | |||||||| |||||||| ||||| || || || | | || ||||| |||||||| |
Sbjct 1434 TATAGAGGTGGCCAATTACGTCCAGAAAGTTATTGGCGCG-GTCTTGGGCTTCGAATGCA 1492
Query 1509 CTGAACTTACAAGGAAGGATAAGTATCTGTTGCTTGGAGGCAACGACGGAAAGGTTGAGT 1568
| |||||||| | |||||||| ||||| ||||||||||| || ||||| ||||| ||||
Sbjct 1493 CCGAACTTACTCGCAAGGATAAATATCTTTTGCTTGGAGGTAATGACGGCAAGGTGGAGT 1552
Query 1569 CTATCA 1574
||||||
Sbjct 1553 CTATCA 1558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69705148350
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5