BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01680.1
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg909804 jgi|Araly1|909804|Al_scaffold_0001_58 1471 0.0
> Ahg909804 jgi|Araly1|909804|Al_scaffold_0001_58
Length=930
Score = 1471 bits (796), Expect = 0.0
Identities = 886/930 (95%), Gaps = 3/930 (0%)
Strand=Plus/Plus
Query 39 ATGGAAGACGCCATATATGTTGCAGTGAATCAAGATGTTCGAGAAAGTaaaaaaaCTTTG 98
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAAGACGCCATTTATGTTGCAGTGAATCAAGATGTTCGAGAAAGTAAAAAAACTTTG 60
Query 99 TTATGGGCTTTGAAAAATCTTCAAGTCAAGAAGATTTTCCTTCTTCATGTTCATCTTCCA 158
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTATGGACATTGAAAAATCTTCAAGTCAAGAAGATTTTCCTTCTTCATGTTCATCTTCCA 120
Query 159 TTTTCGTTGACCACTTCTTCAAGTAGGCTTGAACAAAGTGAGATCGATGCAATCCAAGAT 218
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 TTTTCGTTGACCACTTCCTCAAGTAGGTTTGAACAAAGTGAGATCGATGCAATCCAAGAT 180
Query 219 TCAGAACTGAATACTTCAGTAAATAGCCTCTACAAGTACCGTGATATCTGCATAAAC-AA 277
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 181 TCAGAACTGAATACTTCAGTTAATAGCCTCTACAAGTACCGTGATATCTGCATAAACAAA 240
Query 278 --AGGGGTTAATGAAAAAGATGTGGATACATCAATGATCTCAGGACATGATGTGGGGGAA 335
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 GGAGGGGTTAATGAAGAAGATGTGGATACATCATTGATCTCAGGACATGATGTGGGGGAA 300
Query 336 GGGATTGTGGAACTCATCTATCAAAACATTATCACGAACCTCGTTATGGGAGCAGCAGCT 395
||||||||||||||||| |||||||||| ||||||||| || ||||||||||||||||||
Sbjct 301 GGGATTGTGGAACTCATGTATCAAAACAATATCACGAAGCTGGTTATGGGAGCAGCAGCT 360
Query 396 GATCCTCACTATTCCAGGGGAATGTCTATCACATCTAGGAAAGCAGAGTATGTGAGTCAA 455
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 GATTCTCACTATTCCAGGGGAATGTCCATCACATCTAGGAAAGCAGAGTATGTGAGTCAA 420
Query 456 CATGCACCTCATAGCTGTAAAATATGGTTCATCTGCAAGGGGAAACTCATCAAGCAAAGA 515
|||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 421 CATGCACCTCGTAGCTGTAAAATGTGGTTCATCTGCAAGGGGAAACTCATCAAGAAAAGA 480
Query 516 GAAAGAAGTTTCTACCTCGGGAATCCATCAGACTCATTCTCAGAATTCTCTACTTCTGCT 575
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAAAGAAGTTTCGACATCGGGAATCCATCAGACTCATTCTCAGAATTCTCTACTTCTGCT 540
Query 576 GAGAAACCAATTAGCAAAGGAAGAAGAAGGGATGAGGAAGAGGAACCCGAGTCACCTAAA 635
||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||
Sbjct 541 GAGAAACCAATTAGCAAAGGAAGAAGAAGGGATGAGGAATATGAAACAGAGTCACCTAAA 600
Query 636 GAACATCCAGGTTGGATACTAGAACCTGAGGAATCACCAAAGAAAGGAAGGAAGGAAACT 695
|||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 601 GAACATCCAGTTTGGATACTAGAACCCGAGGAATCACCAAAGAAAGGAAAGAAGGAACCT 660
Query 696 ATAGAGAAATCAAAAAGCAATGAGAGCGATGAAGACCCACGTCTCGAAGATTTCAAGTGT 755
|||||| ||||||||||||| ||||||||||||| |||| ||||||||||||||||||
Sbjct 661 GCAGAGAAGTCAAAAAGCAATGGGAGCGATGAAGACTCACGCCTCGAAGATTTCAAGTGT 720
Query 756 CCCATTTCAATGGAGATAATGCGAGATCCTCATGTGGCTGCTGATGGTTTCACCTACGAG 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCCATTTCAATGGAGATAATGCGAGATCCTCATGTGGCTGCTGATGGTTTCACCTACGAG 780
Query 816 GCAGAGGAATTCAGAAAGTGGCTAAGGTCAGGAGGTCGAACCTCTCCAAAGACAAACAAG 875
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 GCAGAGGAATTCAGAAAGTGGCTAAGGTCAGGAGGTCGAACCTCGCCAAAGACAAACAAG 840
Query 876 CCGCTTGAGAATCACAATCTCGTTCCAAATCACACTCTTCGTATAATCATAAAAGATTGG 935
|||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 841 CCGCTTGAGAATCATAATCTTGTTCCAAATCACACTCTTCGTATAATCATTAAAGACTGG 900
Query 936 CTGGAGAAGAACCCAAATTATAAACGTTGA 965
|| ||||||||||||||| |||||| ||||
Sbjct 901 CTCGAGAAGAACCCAAATCATAAACATTGA 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35835541980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5