BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01710.1
Length=2492
Score E
Sequences producing significant alignments: (Bits) Value
Ahg470104 jgi|Araly1|470104|fgenesh2_kg.1__58__AT1G01710.1 2392 0.0
Ahg909767 jgi|Araly1|909767|Al_scaffold_0001_21 219 1e-55
> Ahg470104 jgi|Araly1|470104|fgenesh2_kg.1__58__AT1G01710.1
Length=2161
Score = 2392 bits (1295), Expect = 0.0
Identities = 1414/1470 (96%), Gaps = 14/1470 (1%)
Strand=Plus/Plus
Query 123 ATGAACACCGAGTCAGTTGTCGAGTTCCTTGGAAACGTCCCTTTACTCCAGAAATTACCG 182
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACACCGATTCAGTTGTCGAGTTCCTTGGAAACGTCCCTTTACTCCAGAAATTACCG 60
Query 183 AGCTCTTCTCTGAAGAAAATTGCTCAAGTTGTTGTGCCGAAACGTTACGGGAAAGGGGAT 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCTCTTCTCTGAAGAAAATTGCTCAAGTTGTTGTGCCGAAACGTTACGGGAAAGGGGAT 120
Query 243 TATGTGGTTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAGGCT 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATGTGGTTCGTGAAGATCAAACTTGGGATGGATGTTATTTTATTTTGCAAGGAGAGGCT 180
Query 303 CAGGTTTCCGGACCAGACGAAGAAGATAACCGTTCCGAATTCCTCTTGAAACAGTATGAT 362
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 181 CAGGTTTCCGGACCAGACGAAGAAGATAACCGCTCCGAATTCCTCTTGAAACAGTATGAT 240
Query 363 TACTTCGGCGTTGGTTTATCTGGGAACGTTCATTCAGCAGACATTGTTGCTATGTCCCAG 422
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 TACTTCGGCCTTGGTTTATCTGGGAACGTTCATTCTGCAGACATTGTTGCTATGTCCCAG 300
Query 423 CTTACGTGTTTGGTGTTGCCGCGTGATCACTGTCATTTGCTTGAGACTAATTCCATCTGG 482
||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 301 CTTACATGTTTGGTGTTGCCGCGTGATCATTGTCATTTGCTTGAGACAAATTCAATCTGG 360
Query 483 CAATCGGATACGTCACTTGACAAATGCTCTTTAGTGGAACGCATTTTGCAACTCGACCCT 542
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 361 CAATCGGATACGTCGGTTGAAAAATGCTCTTTAGTGGAACGCATTTTGCAACTCGACCCT 420
Query 543 TTAGAATTGAATATCTTCAGGGGGATCACACTACCTGATGCTCCTATATTTGGAAAGGTT 602
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 TTAGAATTGAATATCTTCAGGGGGATCACACTACCTGATGCTCCCATATTTGGAAAGGTT 480
Query 603 TTTGGAGGACAATTTGTCGGACAGGCTCTTGCTGCGGCGTCAAAAACTGTTGATTTTCTC 662
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 481 TTTGGAGGACAATTTGTCGGACAGGCACTTGCTGCGGCATCAAAAACTGTTGATTTTCTG 540
Query 663 AAGGTCGTCCACAGTTTACACTCCTATTTTCTTCTCGTTGGAGATATTGACATCCCCATT 722
||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 541 AAGATAGTCCACAGTTTACACTCCTATTTTCTTCTCGTTGGAGATATTGATATCCCCATT 600
Query 723 ATTTATCAAGTTCACCGCATACGTGATGGGAACAACTTTGCCACCCGAAGAGTTGATGCA 782
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 ATTTACCAAGTTCACCGCATACGTGATGGGAACAACTTTGCCACCCGAAGAGTAGATGCA 660
Query 783 GTACAGAAAGGAAATATCATATTCATCTTGCTGGCATCATTTCAGAAAGAACAACAAGGA 842
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 661 GTACAGAAAGGAAATATCATATTCATCTTGTTGGCATCATTTCAGAAAGAACAACAAGGA 720
Query 843 TTTGAGCACCAGGAGTCAACCATGCCCTCTGTACCAGATCCTGATACGCTTCTATCACTG 902
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 721 TTTGATCACCAGGAGTCAACCATGCCCTCTGTACCAGATCCTAATACGCTTCTATCACTG 780
Query 903 GAGGAGTTGCGTGAAAGCCGTATAACTGATCCTCATTTACCGAGGAGTTATCGGAACAAA 962
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GAGGAGTTGCGTGAACGCCGTATAACTGATCCTCATTTACCGAGGAGTTATCGGAACAAA 840
Query 963 GTTGCAACTAGAAACTTTGTTCCATGGCCTATAGAGATTCGATTTTGTGAGCCCAGCAAT 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTTGCAACTAGAAACTTTGTTCCATGGCCTATAGAGATTCGATTTTGTGAGCCCAGCAAT 900
Query 1023 TCAACAAATCAGACAAAGTCTCCTCCGAGATTGAACTATTGGTTTAGAGCAAAGGGAAGG 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCAACAAATCAGACAAAGTCTCCTCCGAGATTGAACTATTGGTTTAGAGCAAAGGGAAGG 960
Query 1083 CTTTCTGATGATCAAGCTTTGCACCGATGTGTCGTTGCATTTGCCTCGGATTTAATATTT 1142
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTTTCTGATGACCAAGCTTTGCACCGATGTGTCGTTGCATTTGCCTCGGATTTAATATTT 1020
Query 1143 TGTGGTGTTGGTTTGAACCCTCACCGGAGAAAAGGGGTGAAATCCGCCGCACTTAGCCTG 1202
|||||||| ||||||||||||||||| ||||||||| ||| |||||| ||||||||||||
Sbjct 1021 TGTGGTGTCGGTTTGAACCCTCACCGCAGAAAAGGGCTGAGATCCGCTGCACTTAGCCTG 1080
Query 1203 GACCATGCGATGTGGTTTCACCGACCTCTAAGAGCCGACGAGTGGTTGCTCTATGTGATT 1262
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1081 GACCATGCGATGTGGTTTCACCGACCTCTAAGAGCCGATGACTGGTTGCTCTATGTGATT 1140
Query 1263 GTGAGTCCAACTGCGCATGAGACCCGTGGTTTTGTGACTGGTCAAATGTTCAACAGGAAA 1322
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1141 GTGAGTCCAAGTGCGCATGAGACCCGTGGTTTTGTGACTGGTGAAATGTTCAACAGAAAA 1200
Query 1323 GGAGAGCTGGTTGTATCATTAACGCAAGAGGCCCTATTAAGAGAGGCTAGACCTCCAAAA 1382
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GGAGAGCTGGTTGTATCATTGACGCAAGAGGCCCTATTAAGAGAGGCTAGACCTCCAAAA 1260
Query 1383 CCCTCCGG-CACGTCGAAGCTCTGAATGGCTCTCA-----AC-GTAAGTTAAATAAGA-- 1433
|||| || |||||||||||||||||||||||||| || ||||||||| |||||
Sbjct 1261 CCCTT-GGTCACGTCGAAGCTCTGAATGGCTCTCAGCCTCACCGTAAGTTAA-TAAGAAG 1318
Query 1434 T-ACATTATTACGAGTACAAGGCGACGAATAAAAA-GATCAAAAACCAATCTGGGTGGGT 1491
| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
Sbjct 1319 TTACATTATTACGAGTACAAGGCGACGAATAAAAAAGATCAAAAACCAATCTGGTTGG-T 1377
Query 1492 ACTAAATAAAAGATTTTATTAGACAAACTCATAATGTCAATGTAGCACGCTGTATGTACA 1551
|||||||||||||||||| |||||||||| || ||||||||||| |||||||||||||||
Sbjct 1378 ACTAAATAAAAGATTTTAGTAGACAAACTTATTATGTCAATGTATCACGCTGTATGTACA 1437
Query 1552 TTGTTTGATTCCGGCCTTCTCACCTCTATC 1581
||||||||||||||||||||||||||||||
Sbjct 1438 TTGTTTGATTCCGGCCTTCTCACCTCTATC 1467
Score = 676 bits (366), Expect = 0.0
Identities = 502/565 (89%), Gaps = 19/565 (3%)
Strand=Plus/Plus
Query 1822 TCTCCTCGCTTTTGTTGGTCTTGGAAAAACCCTGGG-ATTTTGGGTATCTCTGAGCACGA 1880
|||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||| |
Sbjct 1610 TCTCCTCGCTTTTGTTCGTCTT-GAAAAACCCTGGGTCTTTTGGGTATCTCTGAGCACAA 1668
Query 1881 ATTCT--ACATTCTCATGGCTTTCGAACACAGAAATGAAGACCTAAATTCCTTGGATTCG 1938
||||| | | |||||||||||||| | | ||| |||||||||||||||
Sbjct 1669 ATTCTAGAGAGTCTCATGGCTTTCG----C------G--GACAGAAATTCCTTGGATTCT 1716
Query 1939 GAAGAAGATCTGGAGAAAATGGAGTCAGAGGTGGAGCAAATGTCGCGCAAGGTTTCCGAG 1998
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1717 GAAGAAGATCTGGAGAAACTGGAGTCAGAGGTGGAGCATATGTCGCGCAAGGTTTCCGAG 1776
Query 1999 TACAGGAAAAGCCTACCGAGTAATCTGAGCAATTCTGTGATTTCTTCTCGTAGATCCAAT 2058
||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||
Sbjct 1777 TACAGGAAAAGCCTACCGAGTCATCTGAGCAACACTGTGATTTCTTCTCATAGATCCAAT 1836
Query 2059 TTTCCCAACATCGATTCTTTGGGCTTTCGCACAACTAGCACAGTTTGGAAGAACCTCTAG 2118
|||||||||||| |||||||| ||| |||||||||| ||||||| |||||||| | ||
Sbjct 1837 TTTCCCAACATCAATTCTTTGCTCTTCCGCACAACTACCACAGTTAGGAAGAACTTGTAC 1896
Query 2119 TGTCAAGAGATGGAGCACATATAGGTGGAATCGAACAAGAATCTCGAGATAGCCTGATTC 2178
| |||||||||||||||| | |||| ||||| || ||||| |||||||||||| | ||||
Sbjct 1897 TCTCAAGAGATGGAGCACGTCTAGGAGGAATAGAGCAAGAGTCTCGAGATAGCTTTATTC 1956
Query 2179 AGCTCAAAGAAAGAGTGTACGAGAACATTGCCACAGTGCCTCTAGTTGTAGAGAGAATGC 2238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1957 AGCTCAAAGAAAGAGTGTACGAGAACATTGCCACAGTGCCTCTAGTTGTAGAGAGAATGC 2016
Query 2239 GAGAGAGTAAAGAGAGAATCGACAAGTCCATTTCTTTCAATGGAACTACTA-TG--CACC 2295
||||| ||||||||||||||||||| |||| |||||||||||||||||||| | ||||
Sbjct 2017 GAGAGGGTAAAGAGAGAATCGACAAATCCAATTCTTTCAATGGAACTACTACTATACACC 2076
Query 2296 CGGCTTTCACAAGGCGGAAAGCTAGCTAACTGATCAGTTTCTACTTCTCCCTATTGGCTT 2355
||||||||||||| || ||||||| ||||| ||||||||||| |||||| |||||||||
Sbjct 2077 CGGCTTTCACAAGACGAAAAGCTAACTAACCAATCAGTTTCTAGTTCTCCATATTGGCTT 2136
Query 2356 TACCACTCAAAGAAAGCTAATGCAT 2380
||||||||||| |||||||||||||
Sbjct 2137 TACCACTCAAACAAAGCTAATGCAT 2161
> Ahg909767 jgi|Araly1|909767|Al_scaffold_0001_21
Length=204
Score = 219 bits (118), Expect = 1e-55
Identities = 126/130 (97%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 831 GAACAACAAGGATTTGAGCACCAGGAGTCAACCATGCCCTCTGTACCAGATCCTGATACG 890
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 52 GAACAACAAGGATTTGATCACCAGGAGTCAACCATGCCATCTGTACCAGATCCTGATACG 111
Query 891 CTTCTATCACTGGAGGAGTTGCGTGAAAGCCGTATAACTGATCCTCATTTACCGAGGAGT 950
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 112 CTTCTATCACTGGAGGAGTTGCGTGAACGCCGTATAACTGATCCTCATTTACCAAGGAGT 171
Query 951 TATCGGAACA 960
||||||||||
Sbjct 172 TATCGGAACA 181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93930544170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5