BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G01720.1
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg918785 jgi|Araly1|918785|scaffold_100066.1 1321 0.0
> Ahg918785 jgi|Araly1|918785|scaffold_100066.1
Length=938
Score = 1321 bits (715), Expect = 0.0
Identities = 840/895 (94%), Gaps = 30/895 (3%)
Strand=Plus/Plus
Query 141 TATGTCAGAATTATTACAGTTGCCTCCAGGTTTCCGATTTCACCCTACCGATGAAGAGCT 200
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 30 TATGTCAGAATTATTACAGTTGCCTCCAGGATTCCGATTCCACCCTACCGATGAAGAGCT 89
Query 201 TGTCATGCACTATCTCTGCCGCAAATGTGCCTCTCAGTCCATCGCCGTTCCGATCATCGC 260
|||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||
Sbjct 90 TGTCATGCACTATCTCTGCCGCAAATGTACTTCTCAGTCCATCGCTGTTCCTATCATCGC 149
Query 261 TGAGATCGATCTCTACAAATACGATCCATGGGAGCTTCCTGGTTTAGCCTTGTATGGTGA 320
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 150 TGAGATCGATCTCTACAAGTACGATCCATGGGAGCTTCCTGGTTTAGCCTTGTATGGTGA 209
Query 321 GAAGGAATGGTACTTCTTCTCTCCCAGGGACAGAAAATATCCCAACGGTTCGCGTCCTAA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 GAAGGAATGGTACTTCTTCTCTCCCAGGGACAGAAAATATCCCAACGGTTCGCGTCCTAA 269
Query 381 CCGGTCCGCTGGTTCTGGTTACTGGAAAGCTACCGGAGCTGATAAACCGATCGGACTACC 440
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 270 CCGGTCTGCTGGTTCTGGTTACTGGAAAGCTACCGGAGCTGATAAACCGATCGGACTTCC 329
Query 441 TAAACCGGTCGGAATTAAGAAAGCTCTTGTTTTCTACGCCGGCAAAGCTCCAAAGGGAGA 500
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 330 TAAACCGGTCGGAATTAAGAAAGCTCTTGTTTTCTACGCCGGAAAAGCCCCAAAAGGAGA 389
Query 501 GAAAACCAATTGGATCATGCACGAGTACCGTCTCGCCGACGTTGACCGGTCCGTTCGCAA 560
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 390 GAAAACCAATTGGATCATGCACGAGTACCGTCTCGCCGACGTTGACCGGTCGGTTCGCAA 449
Query 561 GAAGAAGAATAGTCTCAGGCTGGATGATTGGGTTCTCTGCCGGATTTACAACAAAAAAGG 620
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 450 GAAGAAGAATAGTCTCAGGCTGGATGATTGGGTTCTTTGCCGGATTTACAACAAAAAAGG 509
Query 621 AGCTACCGAGAGGCGGGGACCACCGCCTCCGGTTGTTTACGGCGACGAAATCATGGAGGA 680
||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 510 AGCTACCGAGAGGCGTGGACCACCTCCTCCGGCTGTTTACGGCGACGAAATCATGGAGGA 569
Query 681 GAAGCCGAAGGTGACGGAGATGGTTATGCCTCCGCCGCCGCAACAG---------AC--- 728
|||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 570 GAAGCCGAAGGTGACGGAGATGGTTATGCCTCCGCCGCAGCAACAGGCGGCGGCGACGGC 629
Query 729 -A-----A-GT-GAG----TTCGCGTATTTCGACACGTCGGATTCGGTGCCGAAGCTGCA 776
| | | ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 630 GACGGCGACGGCGAGCGAGTTCGTGTATTTCGACACGTCGGATTCGGTGCCGAAGCTGCA 689
Query 777 TACTACGGATTCGAGTTGCTCGGAGCAGGTGGTGTCGCCGGAGTTCACGAGCGAGGTTCA 836
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 TACGACGGATTCGAGCTGCTCGGAGCAGGTGGTGTCGCCGGAGTTCACGAGCGAGGTTCA 749
Query 837 GAGCGAGCCCAAGTGGAAAGATTGGTCGGCCGTAAGTAATGACAATAACAATACCCTTGA 896
|||||||||||||||||| ||||||||||| |||||||||| |||||||| |||||||
Sbjct 750 GAGCGAGCCCAAGTGGAAGGATTGGTCGGCTGTAAGTAATGCCAATAACA---CCCTTGA 806
Query 897 TTTTGGGTTTAATTACATTGATGCCACCGTGGATAACGCGTTTGGAGGAGGAGGGAGTAG 956
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 807 TTTTGGGTTTAATTACATTGATGCCACCGTGGATAACGCGTTTGGAGGAGG-G--AGTAG 863
Query 957 TAATCAGATGTTTCCGCTACAGGATATGTTCATGTACATGCAGAAGCCTTACTAG 1011
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TAATCAGATGTTTCCGCTACAGGATATGTTCATGTACATGCAGAAGCCTTACTAG 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49216685847
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5